View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_22 (Length: 308)
Name: NF16575_low_22
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 41965872 - 41966176
Alignment:
| Q |
4 |
ccaagaatatctgcaaccttaggaacttcgtttgagttgtgactactattcatcaagttccaatctgtttaatcatcaataaaataatcaacaaaacata |
103 |
Q |
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| T |
41965872 |
ccaagaaaatctgcaacctttggaacttcgtttgagttgtgactactattcatcaagttccaatctgtttaatcatcaataaaataatcaacaaaacata |
41965971 |
T |
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| Q |
104 |
ggttatatttatatatgtggcagcttgaagcagatataaaagaggttgattaaattaccatgattttggaaagggttttgcaacatgctgtcattgacta |
203 |
Q |
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| T |
41965972 |
ggttatatttatatatgtggcagcttgaagcagatataaaagaggttgattaaattaccatgattttggaaagggttttgcaacatgttgtcattgacta |
41966071 |
T |
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| Q |
204 |
atgttccaagagaaaagtgatgatgagattgatttggttgaagatgaggtggtaatgaaggatgatgagttggagaaagtggagatgaaagccagttatt |
303 |
Q |
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| T |
41966072 |
atgttccaagagaaaagtgatgatgagattgatttggttgaagatgaggtggtaatgaaggatgatgagttggagaaagtggaaatgaaagccagttatt |
41966171 |
T |
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| Q |
304 |
tgagc |
308 |
Q |
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| T |
41966172 |
tgagc |
41966176 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 24563937 - 24563999
Alignment:
| Q |
159 |
taccatgattttggaaagggttttgcaacatgctgtcattgactaatgttccaagagaaaagtgatgat |
227 |
Q |
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| T |
24563937 |
taccatgattttggaaagggtttt---ccatgttgtcattgactaa---tccaagaggaaagtgatgat |
24563999 |
T |
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