View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16575_low_23 (Length: 306)
Name: NF16575_low_23
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_23 |
 |  |
|
| [»] scaffold0400 (2 HSPs) |
 |  |  |
|
| [»] scaffold0365 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 15017021 - 15016750
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15017021 |
tttggctcaaatttaacttcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgctgcaagctccaatgcagttaattc |
15016922 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016921 |
gtgcaatgattcaatttgttcaggaacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
15016822 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016821 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
15016750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 15025023 - 15024753
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
15025023 |
tttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctccaatgcagttagctc |
15024924 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024923 |
gtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
15024824 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
288 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15024823 |
tttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtat |
15024753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 15032364 - 15032094
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
15032364 |
tttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctccaatgcagttagctc |
15032265 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032264 |
gtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
15032165 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
288 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15032164 |
tttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtat |
15032094 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 15002013 - 15001742
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
15002013 |
tttggctcaaatttaactgcaataacatagacaacataccaagtttttcagggatgaatccactcaaattatttgttgcaagctccaatgcagttagttg |
15001914 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
||||||||| ||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15001913 |
atgcaatgatgcaatttgtactggaacttctccataaagatgattgttacttaacgagagtttgatcaacaaagataagttttctaactcctttggaatt |
15001814 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
289 |
Q |
| |
|
|| | | | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001813 |
tttcgcattagatggtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtatg |
15001742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 15010906 - 15010636
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
15010906 |
tttggctcaaatttaactgcaataacatagacaacataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttg |
15010807 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
15010806 |
atgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatt |
15010707 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
288 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
15010706 |
tttcccattagatggtttgaagacaagttaagctcctgtaaatttgttgcacttcctagttctggtggtat |
15010636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 15036924 - 15036656
Alignment:
| Q |
20 |
tggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattcgt |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| || | |
|
|
| T |
15036924 |
tggctcaaattcaactgcaataacctagacaacataccaagtttttccaggatgaagccacttaagttatttgttgcaagctccaatgcagttagttgat |
15036825 |
T |
 |
| Q |
120 |
gcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttt |
219 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| |
|
|
| T |
15036824 |
gcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaacgagagtttgaacaacaaagataaatattttagctcctttggaatttt |
15036725 |
T |
 |
| Q |
220 |
ccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
288 |
Q |
| |
|
||| | |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036724 |
tcccattagatcgtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtat |
15036656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 14503888 - 14503645
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||||||||||||||||| | ||||| | | |
|
|
| T |
14503888 |
tttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttgttgcaagctccaaggtagttagtgc |
14503789 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
14503788 |
ttgcaatgatgcaatttgtataggaacctctccagaaagatgattgttacttatcgagagtttgatcaacaaagacaagtttcctagatcctttggaatt |
14503689 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatt |
261 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14503688 |
tttccagtaagatggtttgatgacaagttaagttcatgtaaatt |
14503645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 77 - 289
Target Start/End: Complemental strand, 14467650 - 14467438
Alignment:
| Q |
77 |
ccactgaaattatttgttgcaagctccaatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgaga |
176 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | | || || ||||||||| ||| ||| |||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
14467650 |
ccacttaaattatttgttgaaagctccaaggtatctagtttttgcaatgatgcaacttgtgcaggaacttctcctgaaagatgattgttacttaccgaga |
14467551 |
T |
 |
| Q |
177 |
gtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctag |
276 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
14467550 |
gttggatcaacaaagataagctttctagctcctttggaatttttcccgtaagatggtttgaagacaggtttagttcatgtaaatttgttgctcggcctag |
14467451 |
T |
 |
| Q |
277 |
ttctggtggtatg |
289 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
14467450 |
ttctggcggtatg |
14467438 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 14522830 - 14523080
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
14522830 |
tttggctcaaattcaactgcaataacctagacaaccttccaagtttttcagggataaaaccacttaaattatttgttgcaagatccaatgtagttagttc |
14522929 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
||||||||| |||| ||| ||| |||||||| ||||||||||| ||||||| |||||||| ||||| |||||||||| |||| |||||||||||| |
|
|
| T |
14522930 |
atgcaatgatgcaatctgcataggaacttctcccgaaagatgattattacttatcgagagttggatcagtgcagataagtttcctagatcctttggaatt |
14523029 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgct |
268 |
Q |
| |
|
|| || |||| || ||||| ||||||| |||| ||||||||| |||||| |
|
|
| T |
14523030 |
tttcctataagttgatttgaggacaagtcaagtatatgtaaattggttgct |
14523080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 14532951 - 14533222
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| ||||||| | | |
|
|
| T |
14532951 |
tttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgc |
14533050 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14533051 |
ctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctctggaatt |
14533150 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
289 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
14533151 |
tttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgaggtatg |
14533222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 15040665 - 15040578
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaa |
105 |
Q |
| |
|
||||||||| |||||| || |||||| |||| || | ||||||| || |||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
15040665 |
tttggctcatatttaagtgtaataacatagataatcttccaagttgttttgggacgaagccacttaaattatttgttgccagctccaa |
15040578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 12685 - 12414
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| ||||||| | | |
|
|
| T |
12685 |
tttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgc |
12586 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12585 |
ctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatt |
12486 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
289 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
12485 |
tttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatg |
12414 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 6359 - 6197
Alignment:
| Q |
56 |
ccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaa |
155 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||| || ||||||| ||||| |||||||| || |
|
|
| T |
6359 |
ccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcctacaa |
6260 |
T |
 |
| Q |
156 |
gatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
218 |
Q |
| |
|
|||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6259 |
gatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 13328 - 13057
Alignment:
| Q |
18 |
tttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattc |
117 |
Q |
| |
|
||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| ||||||| | | |
|
|
| T |
13328 |
tttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgc |
13229 |
T |
 |
| Q |
118 |
gtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatt |
217 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
13228 |
ctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatt |
13129 |
T |
 |
| Q |
218 |
ttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
289 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
13128 |
tttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatg |
13057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 7003 - 6841
Alignment:
| Q |
56 |
ccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaa |
155 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||| || ||||||| ||||| |||||||| || |
|
|
| T |
7003 |
ccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcctacaa |
6904 |
T |
 |
| Q |
156 |
gatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattt |
218 |
Q |
| |
|
|||||||| |||||| | |||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
6903 |
gatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaattt |
6841 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 16024819 - 16024755
Alignment:
| Q |
186 |
acaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagt |
250 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| || |||||||||||||| |||| |||| |
|
|
| T |
16024819 |
acaaagataagttgcttaactcctttggaatttcccctgtgagatggtttgaagataagtcaagt |
16024755 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University