View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_27 (Length: 254)
Name: NF16575_low_27
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 21638915 - 21639154
Alignment:
| Q |
2 |
taaatcacgtggaaaatctcaagaataaaagtatagcttagaacaatgattcagttatgacatggttttgcaatgatatagagagatatagctttataca |
101 |
Q |
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|||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
21638915 |
taaatcacttagaaaatctcaagaataaaagtatagtttataacaatgattcggttatgacatagttttgcaacgatatggagagatatagctttataca |
21639014 |
T |
|
| Q |
102 |
acttcttagcaacctagtggttttggggggtctttcaactcaaccatcatgttaaacaagggacgacacacctttccgagttcactcacaatctttgaaa |
201 |
Q |
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| T |
21639015 |
acattttagcaacctagtggttttggagggtctttcaactcgaccatcatgtcaaacatgggacgacacacctttccgagttcactcacaatctttaaaa |
21639114 |
T |
|
| Q |
202 |
tgaaacttttctaggttacgtctcagtacatagttcatctc |
242 |
Q |
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| T |
21639115 |
tgcaagttttct-ggttacgtcttagtacataattcttctc |
21639154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 2871159 - 2871334
Alignment:
| Q |
17 |
atctcaagaataaaagtatagcttagaacaatgattcagttatgacatggttttgcaatgatatagagagatatagctttatacaacttcttagcaacct |
116 |
Q |
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| T |
2871159 |
atctcaagaataaaagtgtagtttagaacaatgaatcaattatgagatggttttacaatgatatagtttgatatagatctatacagtttcttggaaacct |
2871258 |
T |
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| Q |
117 |
agtggttttggggggtctttcaactcaaccatcatgttaaacaagggacgacacacctttccgagttcactcacaat |
193 |
Q |
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| T |
2871259 |
agtgatctt-aaaggtctttaaactctaccatcatgataaacatgggacgactgccctttcggggtacactcacaat |
2871334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 42526458 - 42526313
Alignment:
| Q |
23 |
agaataaaagtatagcttagaacaatgattcagttatgacatggttttgcaatgatatagagagatatagctttatacaacttcttagcaacctagtggt |
122 |
Q |
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||||||||||| | | |||||| || || |||||||| |||||||||||||| ||||||||||||||||| |||||| | ||| || | ||| | || | |
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| T |
42526458 |
agaataaaagtgtggtttagaataaagaatcagttataacatggttttgcaacgatatagagagatatagttttatatagctttttggtaacatggtcgc |
42526359 |
T |
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| Q |
123 |
tttggggggtctttcaactcaaccatcatgttaaacaagggacgaca |
169 |
Q |
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| T |
42526358 |
ctt-aggggtattttaactcaaccatcatgttaaacatgggatgaca |
42526313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 2815185 - 2815118
Alignment:
| Q |
17 |
atctcaagaataaaagtatagcttagaacaatgattcagttatgacatggttttgcaatgatatagaga |
85 |
Q |
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| T |
2815185 |
atctcaagaataaaagtttggtttaagacaa-gaatcagttatggcatggttttgcaaagatatagaga |
2815118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 7394021 - 7394097
Alignment:
| Q |
29 |
aaagtatagcttagaacaatgattcagttatgacatggttttgcaatgatatagagagatatagctttatacaactt |
105 |
Q |
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||||||| ||| ||| ||||| ||||||||||||||| ||||||| ||||||||| | | | ||||||||||||| |
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| T |
7394021 |
aaagtatggctatgaaaaatgaatcagttatgacatgggtttgcaaagatatagagtgttgcaactttatacaactt |
7394097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 13192487 - 13192447
Alignment:
| Q |
137 |
caactcaaccatcatgttaaacaagggacgacacacctttc |
177 |
Q |
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| T |
13192487 |
caactcaaccatcttgttaaacatggaacgacacacctttc |
13192447 |
T |
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