View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_29 (Length: 229)
Name: NF16575_low_29
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_29 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 18840587 - 18840372
Alignment:
| Q |
14 |
attatactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggc |
113 |
Q |
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| T |
18840587 |
attatactttatgtcagattggtagggggagtttgagaatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggc |
18840488 |
T |
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| Q |
114 |
tagtacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattat |
213 |
Q |
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| T |
18840487 |
tagtacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacacatgtctggcttcgactgatctgaattat |
18840388 |
T |
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| Q |
214 |
gcattataatttcttt |
229 |
Q |
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|||||||||||||||| |
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| T |
18840387 |
gcattataatttcttt |
18840372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 18851758 - 18851543
Alignment:
| Q |
14 |
attatactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggc |
113 |
Q |
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| T |
18851758 |
attatactttatgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggtttttgagactctaggcatctcaatggagcaggc |
18851659 |
T |
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| Q |
114 |
tagtacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattat |
213 |
Q |
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| T |
18851658 |
aagtacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaatgcatgtctggcttcgactgatcagaattat |
18851559 |
T |
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| Q |
214 |
gcattataatttcttt |
229 |
Q |
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| T |
18851558 |
gcattataatttcttt |
18851543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 50012917 - 50012807
Alignment:
| Q |
25 |
tgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctagtacatccg |
124 |
Q |
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| T |
50012917 |
tgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggctagtacatgcg |
50012818 |
T |
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| Q |
125 |
actccattcct |
135 |
Q |
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| T |
50012817 |
actccattcct |
50012807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 51297923 - 51297810
Alignment:
| Q |
14 |
attatactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggc |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
51297923 |
attatactttatgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggc |
51297824 |
T |
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| Q |
114 |
tagtacatccgact |
127 |
Q |
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| T |
51297823 |
tagtacatgcgact |
51297810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 51296548 - 51296454
Alignment:
| Q |
132 |
tccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattatgcattataatttcttt |
229 |
Q |
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| T |
51296548 |
tccttatattttggaaatggcgtagaatgcttatatttat---gccttcaaggcatgcctggcttcgactgatctgaattatgcattataaattcttt |
51296454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 44109989 - 44109879
Alignment:
| Q |
25 |
tgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctagtacatccg |
124 |
Q |
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||||||||||| ||||||||||||| || |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
44109989 |
tgtcagattggaggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggctagtacatgcg |
44109890 |
T |
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| Q |
125 |
actccattcct |
135 |
Q |
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| T |
44109889 |
actccattcct |
44109879 |
T |
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