View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_5 (Length: 485)
Name: NF16575_low_5
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 31268130 - 31268583
Alignment:
| Q |
15 |
agaaacatggagtattattgacatatatagtatataatcaattgtttagggtcaagtatatgacnnnnnnnggnnnnnnnggataatattctgaagcagc |
114 |
Q |
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| T |
31268130 |
agaaacatggagtattattgacatatatagtatataatcaattgtttagggtcaagtatatgacaaaaaaaaggttttttgggtaatattctgaagcagc |
31268229 |
T |
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| Q |
115 |
tataaccacactaagtcttatggtggatccgtccctgtttgtgatatctttactagttatgtttttccggatacattattagtataaactttaaattaac |
214 |
Q |
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| T |
31268230 |
tataaccacactaagtcttatggtggatc-gtccctgcttgtgatatctttactagttacgttttttccgatacattattagtataaactttaaattaac |
31268328 |
T |
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| Q |
215 |
aacaaaatgttattaaactgcctctaaatgggaaactccaagagcacctctaacaagatatatttgttgagtttgacaaactaacacatggtttttcgtt |
314 |
Q |
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| T |
31268329 |
aacaaaatgttattaa-ctgcctctaaatgggaaactccaagagcacctctaacaagatatatttgttgagtttgacaaactaacacatggtttttcgtt |
31268427 |
T |
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| Q |
315 |
ccacacactctgacacatagtttttcactaattcaaccttggggatcatcataggttcgataaggtggcatcacaataacttcagtaagtaacgttactt |
414 |
Q |
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| T |
31268428 |
ccacacactgtgacacatagtttttcactagttcaaccttggggatcatcataggttcgataaggtggcatcacaatgacttcagtaagtaacgttactt |
31268527 |
T |
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| Q |
415 |
taagaattttgattaaatattaatatgaaggggagttttgacgcaatgataatatt |
470 |
Q |
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| T |
31268528 |
tgagaattttgattaaatattaatatgaaggggagttttgacgcaatgataatatt |
31268583 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 7280757 - 7280709
Alignment:
| Q |
28 |
attattgacatatatagtatataatcaattgtttagggtcaagtatatg |
76 |
Q |
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|||| |||||||||| |||||||||||| |||||||||| |||||||| |
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| T |
7280757 |
attaatgacatatatgatatataatcaatagtttagggtctagtatatg |
7280709 |
T |
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