View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16575_low_6 (Length: 484)
Name: NF16575_low_6
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 201 - 383
Target Start/End: Complemental strand, 41966393 - 41966211
Alignment:
| Q |
201 |
caacctctattctccctaattcccctttatcttcatctacttaaagaggtttggagagagatagcaagagctttaaaccctagctagtatccttggtaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966393 |
caacctctattctccctaattcccctttatcttcatctacttaaagaggtttggagagagatagcaagagctttaaaccctagctagtatccttggtaaa |
41966294 |
T |
|
| Q |
301 |
cctataactatatcactctttcactactttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966293 |
cctataactatatcactctttcactactttcaatttcatttccacaccccattttcctcaaaaagaatatagtaaacttttta |
41966211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 41966577 - 41966428
Alignment:
| Q |
19 |
catcttagataagtaacattatttttaataatcattgtaggcagattatatctttgtttctttctttgtgttggaaactgatggaattaaaaactaaacc |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966577 |
catcttagataaataacattatttttaataatcattgtaggcagattatatctttgtttctttctttgtgttggaaactgatggaattaaaaactaaacc |
41966478 |
T |
|
| Q |
119 |
ttcacaataggtgttagatgagacataaacaactcatttgaatattatgt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966477 |
ttcacaataggtgttagatgagacataaacaactcatttgaatattatgt |
41966428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 41966215 - 41966156
Alignment:
| Q |
414 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966215 |
ttttagatgcaggttgtgcttaatttgtactgaatatgggctcaaataactggctttcat |
41966156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University