View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16575_low_7 (Length: 483)
Name: NF16575_low_7
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16575_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 40724183 - 40723709
Alignment:
| Q |
1 |
caaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctatt |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724183 |
caaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctatt |
40724084 |
T |
|
| Q |
101 |
gcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtgtcacaacttctgactcttatggatgggctaaaatctcgtgctcatgttattg |
200 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40724083 |
gcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattg |
40723984 |
T |
|
| Q |
201 |
tcatgggtgctactaatcgtcccaacagcattga-----------gaaggtttggtagatttgatagggaaaacgatattggtgttccagatgaaattgg |
289 |
Q |
| |
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||||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40723983 |
tcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgg |
40723884 |
T |
|
| Q |
290 |
gcgacttgaagtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacattactaattaattaacttccacatatgttggtctgt |
389 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40723883 |
gcgacttgaagtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacatttctaattaattaacttccacatatgttggtctgt |
40723784 |
T |
|
| Q |
390 |
cttttctgttttttggttgtgtctaagccctaaggtgttgtggttataattccgttcatcagttgaattcactact |
465 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723783 |
cttttctgttttttggttgt-tctaagccctaaggtgttgtggttataattccgttcatcagttgaattcactact |
40723709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 40665883 - 40666338
Alignment:
| Q |
1 |
caaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttatt-gatgaaattgattctat |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40665883 |
caaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatgaaattgattctat |
40665982 |
T |
|
| Q |
100 |
tgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtgtcacaacttctgactcttatggatgggctaaaatctcgtgctcatgttatt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | || | ||| |
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| T |
40665983 |
tgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatct-----ttatttgatt |
40666077 |
T |
|
| Q |
200 |
gtcatgggtgctactaatcgtcccaacagcattgagaaggtttggtagatttgatagggaaaacgatattggtgttccagatgaaattgggcgacttgaa |
299 |
Q |
| |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40666078 |
ct-at---tgctactaatcgtcccaacagcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaa |
40666173 |
T |
|
| Q |
300 |
gtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacattactaattaattaacttccacatatgttggtctgtcttttctgtt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666174 |
gtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacatttctaattaattaacttccacatatgttggtctgtcttttctgtt |
40666273 |
T |
|
| Q |
400 |
ttttggttgtgtctaagccctaaggtgttgtggttataattccgttcatcagttgaattcactact |
465 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40666274 |
ttttggttgt-tctaagccctaaggtgttgtggttataattccgttcatcagttgaattcactact |
40666338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 41093003 - 41092777
Alignment:
| Q |
8 |
gctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcaccca |
107 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||| || || || | |
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| T |
41093003 |
gctggtgagagtgaaagcaatctaaggaaggcatttgaggaagctgagaagaatgcaccttccatcatctttattgatgagatagattccatagctccta |
41092904 |
T |
|
| Q |
108 |
agcgggagaagacaaacggtgaagttgaaagaaggattgtgtcacaacttctgactcttatggatgggctaaaatctcgtgctcatgttattgtcatggg |
207 |
Q |
| |
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|||| ||||| || |||||||||| || || |||||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |
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| T |
41092903 |
agcgagagaaaactcacggtgaagtagagaggaggattgtctcccaactcttgacccttatggatggtcttaaatcacgtgcacatgtaattgttatggg |
41092804 |
T |
|
| Q |
208 |
tgctactaatcgtcccaacagcattga |
234 |
Q |
| |
|
|| || ||| | ||||| |||||||| |
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|
| T |
41092803 |
agccacaaataggcccaatagcattga |
41092777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 27977299 - 27977635
Alignment:
| Q |
6 |
tggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacc |
105 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || || || ||||| || |
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| T |
27977299 |
tggctggtgagagtgaaagtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagatagactccattgctcc |
27977398 |
T |
|
| Q |
106 |
caagcgggagaagacaaacggtgaagttgaaagaaggattgtgtcacaacttctgactcttatggatgggctaaaatctcgtgctcatgttattgtcatg |
205 |
Q |
| |
|
||| |||||||||| || ||||||||||| |||| ||||| || || || |||| || ||||||||||| ||||| ||||| ||||| ||||| ||| |
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|
| T |
27977399 |
aaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatg |
27977498 |
T |
|
| Q |
206 |
ggtgctactaatcgtcccaacagcattga-----------gaaggtttggtagatttgatagggaaaacgatattggtgttccagatgaaattgggcgac |
294 |
Q |
| |
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|| || || ||||||||||| ||||| || | |||||||| || |||||| |||| | ||||||||||| ||||||||| |||| || | |
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| T |
27977499 |
ggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtc |
27977598 |
T |
|
| Q |
295 |
ttgaagtccttcgcatacataccaaaaacatgaagct |
331 |
Q |
| |
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|||| || || ||||| ||||| ||||| |||||||| |
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|
| T |
27977599 |
ttgaggttctccgcatccatacaaaaaatatgaagct |
27977635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 15690253 - 15690421
Alignment:
| Q |
63 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtgtcacaacttctgac |
162 |
Q |
| |
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|||||| |||| |||||||||||||| ||||||||| || |||||| | ||||||||| | ||||||||| ||||||||||| |||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
|
| Q |
163 |
tcttatggatgggctaaaatctcgtgctcatgttattgtcatgggtgctactaatcgtcccaacagcattg |
233 |
Q |
| |
|
|||||||||| | | ||||| ||||| || |||| | || ||||||||||||| ||| || ||||||| |
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|
| T |
15690351 |
tcttatggattgattgaaatcatgtgcttatattatgcttattggtgctactaatcatcctaatagcattg |
15690421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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