View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16575_low_9 (Length: 448)

Name: NF16575_low_9
Description: NF16575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16575_low_9
NF16575_low_9
[»] chr1 (4 HSPs)
chr1 (16-442)||(45873540-45873966)
chr1 (295-356)||(29169874-29169936)
chr1 (295-380)||(38731549-38731635)
chr1 (292-376)||(4862067-4862152)
[»] chr8 (4 HSPs)
chr8 (250-380)||(28196132-28196263)
chr8 (320-380)||(43823929-43823989)
chr8 (250-380)||(38815234-38815365)
chr8 (322-399)||(24124948-24125026)
[»] chr2 (5 HSPs)
chr2 (295-380)||(41867989-41868075)
chr2 (298-357)||(16351928-16351988)
chr2 (320-380)||(13413291-13413351)
chr2 (320-380)||(17344578-17344638)
chr2 (320-356)||(20142832-20142868)
[»] chr7 (6 HSPs)
chr7 (292-380)||(43856814-43856903)
chr7 (298-380)||(27521411-27521494)
chr7 (295-378)||(19277235-19277319)
chr7 (292-378)||(41117848-41117935)
chr7 (295-380)||(4501199-4501285)
chr7 (320-378)||(25187038-25187096)
[»] chr4 (5 HSPs)
chr4 (305-380)||(50464387-50464463)
chr4 (250-280)||(43849384-43849414)
chr4 (295-380)||(56462187-56462273)
chr4 (295-378)||(34107777-34107861)
chr4 (340-380)||(46391439-46391479)
[»] chr5 (2 HSPs)
chr5 (250-380)||(22188691-22188822)
chr5 (320-380)||(2566202-2566262)
[»] chr3 (5 HSPs)
chr3 (250-356)||(52411927-52412034)
chr3 (295-380)||(7502093-7502177)
chr3 (304-380)||(13582450-13582527)
chr3 (295-380)||(38145996-38146082)
chr3 (295-380)||(53785649-53785735)
[»] chr6 (3 HSPs)
chr6 (333-379)||(3714858-3714904)
chr6 (320-380)||(32115658-32115718)
chr6 (295-380)||(959521-959606)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 45873966 - 45873540
Alignment:
Q  16 gaaagtatttgtgaagaatgaggcacttgtaagcttcttattttatctccttgttggaagatcgacacttaggtcagcatatgttatgatgtgcaggtgg 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45873966 gaaagtatttgtgaagaatgaggcacctgtaagcttcttattttatctccttgttggaagatcgacacttaggtcagcatatgttatgatgtgcaggtgg 45873867  T
Q  116 gtatcaagaaaacatgtatatgagagaatttgagtggggattcaccattgtgcgattggagaccgagagcttttatgatgggaccagctgcccttaaagc 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45873866 gtatcaggaaaacatgtatatgagagaatttgagtggggattcaccattgtgcgattggagaccgagagcttttatgatgggaccagctgcccttaaagc 45873767  T
Q  216 catgtcaaacaaatgaccaaacatgaaaaaacgtaacatgcttttatactatttgtgtttgacacgtttatctctataacaccagatgttgttaaccttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  45873766 catgtcaaacaaatgaccaaacatgaaaaaacgtaacatgcttttatattatttgtgtttgacacatttatctctataacaccagatgtagttaaccttc 45873667  T
Q  316 tacgagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgtttaaaagattagttttaccatctaaagaagtttaacgg 415  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||    
T  45873666 tacgagagttcaaatggccatgcacaacaatgtcatgtctctcaaatctatgaatgttgtgtttaaaagattaattttgccatctaaagaagtttaaggg 45873567  T
Q  416 gctcaacttattgttagagtattatct 442  Q
    || ||||||||||||||| ||| ||||    
T  45873566 gcgcaacttattgttagattatcatct 45873540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 29169874 - 29169936
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctc 356  Q
    ||||||| ||||||||||||||||  |||||||||| |||||| |||| ||||||||||||||    
T  29169874 caccagaggttgttaaccttctacatagagttcaaaaggtcatgcacagcaatgtcatgtctc 29169936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 38731635 - 38731549
Alignment:
Q  295 caccagatgttgttaaccttctac-gagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| ||||||||||||||||  |||||||||| |||||| ||||| ||||||||| |||  |  ||||||||| |||||||||    
T  38731635 caccagaggttgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgttta 38731549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 376
Target Start/End: Original strand, 4862067 - 4862152
Alignment:
Q  292 taacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtg 376  Q
    |||||||| | |||||| |||||||||  |||||||||| |||||| || |||||||||| ||| || | ||||||||||||||||    
T  4862067 taacaccaaaagttgttgaccttctacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtg 4862152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 380
Target Start/End: Complemental strand, 28196263 - 28196132
Alignment:
Q  250 aacatgcttttatactatttgtgtttgacacgtttatctctataacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgt 348  Q
    |||||| |||||||| |||||| |||||||| ||| |||   || ||||| | |||||| ||| |||||| |||||||||| | |||| |||||||||||    
T  28196263 aacatgtttttataccatttgtttttgacacttttgtcttcctagcaccataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgt 28196164  T
Q  349 catgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||||  | ||||| | ||||||||||||    
T  28196163 catgtctcctagatccacggatgttgtgttta 28196132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 43823989 - 43823929
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||||||||||||| || | ||||||||||||||  | |||||| |||||||||||||    
T  43823989 agagttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgttta 43823929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 380
Target Start/End: Complemental strand, 38815365 - 38815234
Alignment:
Q  250 aacatgcttttatactatttgtgtttgacacgtttatctctataacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgt 348  Q
    ||||||||||||||| |||||  |||||||| ||   ||   || ||||||| | |||| |||||||||  |||||||||| |||||| || | ||||||    
T  38815365 aacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacatagagttcaaagggtcatgcatagcaatgt 38815266  T
Q  349 catgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||||  |  |||||||||||||||||||    
T  38815265 catgtctcctaggtccatgaatgttgtgttta 38815234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 399
Target Start/End: Complemental strand, 24125026 - 24124948
Alignment:
Q  322 agttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta-aaagattagttttaccatc 399  Q
    |||||||| |||||| || | ||||||||||||||  |  ||||||||||||||||||| || |||||||||| |||||    
T  24125026 agttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatc 24124948  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 41867989 - 41868075
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| | |||| |||||||||  |||||||||| |||||| || |||||||||||||||| ||  |||||||||||||||||||    
T  41867989 caccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgttta 41868075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 16351928 - 16351988
Alignment:
Q  298 cagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctct 357  Q
    |||| |||||| |||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  16351928 cagaggttgttgaccttctacatagagttcaaatggtcatgcacaacaatgtcatgtctct 16351988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 13413351 - 13413291
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||| |||||| || ||||||||||||||||  |  |||||||||||||||||||    
T  13413351 agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 13413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 17344638 - 17344578
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||| |||||| || ||||||||||||||||  |  |||||||||||||||||||    
T  17344638 agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 17344578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 20142832 - 20142868
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctc 356  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  20142832 agagttcaaaaggtcatacataacaatgtcatgtctc 20142868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 43856903 - 43856814
Alignment:
Q  292 taacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||| |||||| |||||||||  |||||||||| |||||| ||||||||||||||| |||  |  |||||||||||| ||||||    
T  43856903 taacaccagaggttgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgttta 43856814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 27521494 - 27521411
Alignment:
Q  298 cagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||| |||||| |||||||||  |||||||||| |||||| || ||||||||||||||||  || || ||||||||||||||||    
T  27521494 cagaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgttta 27521411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 19277319 - 19277235
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgtt 378  Q
    ||||||| |||||| |||||||||  |||||||||| |||||| || | ||||||||||||||  |  |||||||||||||||||    
T  19277319 caccagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 19277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 41117848 - 41117935
Alignment:
Q  292 taacaccagatgttgttaaccttctac-gagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgtt 378  Q
    |||||||||||||||||||||||||||  |||||| ||| | |||| || | ||||||||||| ||  |  |||||||||||||||||    
T  41117848 taacaccagatgttgttaaccttctacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgtt 41117935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 4501285 - 4501199
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| |||||||||  |||||||||| | |||| || | ||||||||||||||  | || |||||||||||||||||    
T  4501285 caccagaggttgttgaccttctacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgttta 4501199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 25187038 - 25187096
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgtt 378  Q
    |||||||||| |||||| || | ||||||||||||||  | ||||||||||||||||||    
T  25187038 agagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgtt 25187096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 50464387 - 50464463
Alignment:
Q  305 tgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||| |||||||||| |||||| ||| |||||| || |||||||||||||||| |||||  ||||||||||||||||    
T  50464387 tgttgaccttctacgtagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgttta 50464463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 280
Target Start/End: Original strand, 43849384 - 43849414
Alignment:
Q  250 aacatgcttttatactatttgtgtttgacac 280  Q
    |||||||||||||||||||||||||||||||    
T  43849384 aacatgcttttatactatttgtgtttgacac 43849414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 56462187 - 56462273
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| |||||||||  |||||||||| | |||| ||  |||||||||||||||  || ||||| |||||||||||||    
T  56462187 caccagaggttgttgaccttctacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgttta 56462273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 34107777 - 34107861
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgtt 378  Q
    ||||||| | |||| |||||||||  ||||||||||  ||||| || |||||||| |||||||  | ||||||||||||||||||    
T  34107777 caccagaggctgttgaccttctacatagagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgtt 34107861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 46391439 - 46391479
Alignment:
Q  340 caacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||||||||||  ||||||||||||||||| ||||    
T  46391439 caacaatgtcatgtctcctaaatccatgaatgttgtattta 46391479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 380
Target Start/End: Original strand, 22188691 - 22188822
Alignment:
Q  250 aacatgcttttatactatttgtgtttgacacgtttatctctataacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgt 348  Q
    |||||| ||||||||||||||| |||||||| ||    | | || ||||||| | |||| |||||||||  |||||||||| |||||| || |||||| |    
T  22188691 aacatgattttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatat 22188790  T
Q  349 catgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||||  | || |||||||||||||||||    
T  22188791 catgtctcctagattcatgaatgttgtgttta 22188822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 2566202 - 2566262
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||| |||||| || | ||||||||||||||  | |||||| |||||||||||||    
T  2566202 agagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgttta 2566262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 52411927 - 52412034
Alignment:
Q  250 aacatgcttttatactatttgtgtttgacacgtttatctctataacaccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgt 348  Q
    ||||||||||||| | |||||  |||||||| || | || | |||||| |||||| ||| |||||||||  |||||||||| |||||| || ||||||||    
T  52411927 aacatgcttttattccatttgcttttgacactttcagctttctaacactagatgtcgttgaccttctacatagagttcaaagggtcatgcataacaatgt 52412026  T
Q  349 catgtctc 356  Q
    ||||||||    
T  52412027 catgtctc 52412034  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 7502093 - 7502177
Alignment:
Q  295 caccagatgttgttaaccttctacgagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| ||||||||| |||||| ||| |||||| ||||||||||||||| |||  | |||||||||| || ||||||    
T  7502093 caccagaggttgttgaccttctac-agagtttaaagggtcatgcacaacaatgtcatgactcatagatccatgaatattatgttta 7502177  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 13582527 - 13582450
Alignment:
Q  304 ttgttaaccttctac-gagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||| ||||||||| ||||||||||| |||||| || ||||||||||||||||  |   ||||||||||||||||||    
T  13582527 ttgttgaccttctacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgttta 13582450  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 38146082 - 38145996
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| || ||||||  |||||||||| |||||| || ||||||||||||||||  |  |||||||| ||||||||||    
T  38146082 caccagaggttgtttacattctacttagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgttta 38145996  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 53785735 - 53785649
Alignment:
Q  295 caccagatgttgttaaccttctacg-agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| |||||||||  |||||||||| |||||| || | ||||||||||||||  |  |||||||||||| ||||||    
T  53785735 caccagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgttta 53785649  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 3714904 - 3714858
Alignment:
Q  333 tcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttt 379  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||    
T  3714904 tcatgcacaacaatgtcatgtctcataaatccatgaatgttgtgttt 3714858  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 32115718 - 32115658
Alignment:
Q  320 agagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    |||||||||| |||||| || ||||||||||||||||  |  |||||||||||||||||||    
T  32115718 agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 32115658  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 959606 - 959521
Alignment:
Q  295 caccagatgttgttaaccttctacgagagttcaaatggtcatacacaacaatgtcatgtctctcaaatccatgaatgttgtgttta 380  Q
    ||||||| |||||| ||||||||||  |||||||| |||||| || | ||||||  ||||||  |  |||||||||||||||||||    
T  959606 caccagaggttgttgaccttctacgtaagttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgttta 959521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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