View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16576_high_1 (Length: 412)
Name: NF16576_high_1
Description: NF16576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16576_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 29468157 - 29467774
Alignment:
| Q |
10 |
ataatacttgctaaacaaaatcaaaacttttatagataagataagacaaacaaaattagaaaatgaatgaaagcaaataacatcagtaattcagtatcaa |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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| T |
29468157 |
ataacacttgctaaacaaaatcaaaacttttatagataagataagacaaacaaaattaaaaaattaatgaaagcaaacaacatcagtaattcagtatcaa |
29468058 |
T |
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| Q |
110 |
tagataatatgacaaacctgagaatcaagatcaagggtcaccatatcaatacgatctttgaaattcggattgctctctttaaccatctccaatgccttga |
209 |
Q |
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| T |
29468057 |
tatataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttga |
29467958 |
T |
|
| Q |
210 |
cgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccaccgaacaatgcata |
309 |
Q |
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| T |
29467957 |
cgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccaccgaacaatgcata |
29467858 |
T |
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| Q |
310 |
ataagcaacataatttcataacatcacaaaaaggaaatcaataacgaattctcagttgtctttagaggaacaaactaatgggag |
393 |
Q |
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| T |
29467857 |
ataagcaacataatttcataacatcaccaaaaggaaatcaataacgaattctcagttgtctttagaggaacaaactaatgggag |
29467774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 14999297 - 14998932
Alignment:
| Q |
10 |
ataatacttgctaaacaaaatcaaaacttttatagataagataagacaaacaaaattagaaaatgaatgaaagcaaataacatcagtaattcagtatcaa |
109 |
Q |
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| T |
14999297 |
ataacacttgctaaacaaagtcaaaacttt-atagatcagataagacaaagaaaattagaaaatgcatgaaagaaaataacattagt------------- |
14999212 |
T |
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| Q |
110 |
tagataatatgacaaacctgagaatcaagatcaagggtcaccatatcaatacgatctttgaaattcggattgctctctttaaccatctccaatgccttga |
209 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||| |||||| || ||| | |||| |||||| ||||| |||| | | | |||||||||| |
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| T |
14999211 |
tagataatatgacaaacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttga |
14999112 |
T |
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| Q |
210 |
cgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccaccgaacaatgcata |
309 |
Q |
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| T |
14999111 |
cgcgattctctagagacaaattgttgaaggcatttgcaagcattgatttctccggaagtgtcagtttcctgaagtattgtcaaccacaaaacaatgcata |
14999012 |
T |
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| Q |
310 |
ataagcaacataatttcataacatcacaaaaaggaaatcaataacgaattc--tcagttgtctttagaggaacaaactaa |
387 |
Q |
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| T |
14999011 |
ataagcaacgtaatttcataacatcaccaaaaggaaatcaacaacgaatccgatcagttgcctttagaggaacaaactaa |
14998932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 107 - 365
Target Start/End: Original strand, 14741475 - 14741728
Alignment:
| Q |
107 |
caatagataatatgacaaacctgagaatcaagatcaagggtcaccatatcaatacgatctttgaaattcggattgctctctttaaccatctccaatgcct |
206 |
Q |
| |
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|||||| ||| ||||||||||| || ||||| | |||||||||||||||||||| || || |||||| ||||| |||||||||| ||||| ||||||| |
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| T |
14741475 |
caataggtaacatgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggattattctctttaacaatctctaatgcct |
14741574 |
T |
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| Q |
207 |
tgacgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccaccgaacaatgc |
306 |
Q |
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| T |
14741575 |
taaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctccgaaagtgacaacttcctacaatattctcaacaacagaa-----c |
14741669 |
T |
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| Q |
307 |
ataataagcaacataatttcataacatcacaaaaaggaaatcaataacgaattctcagt |
365 |
Q |
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||||||| ||||||| || |||||||| || |||||||||| || | ||||||||||| |
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| T |
14741670 |
ataataaacaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagt |
14741728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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