View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16576_low_1 (Length: 709)
Name: NF16576_low_1
Description: NF16576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16576_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 23 - 709
Target Start/End: Original strand, 36457134 - 36457820
Alignment:
| Q |
23 |
attagcaacataggggagtggattaataatgggtggtcatagaggctatcttggaagcgtaatgctattgattgggaggcctaactggtgcagaatttga |
122 |
Q |
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| T |
36457134 |
attagcaacataggggagtggattaataatgggtggtcatagaggctatcttggaagcgtaatgctattgattgggaggcctaactggtgcagaatttga |
36457233 |
T |
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| Q |
123 |
atacgctgctgctgtcagcgtctccaaggcaggaccagcctgatactgggtctggaaactagaatctacgcagagattcagctgcaaaagctgatgtaga |
222 |
Q |
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| T |
36457234 |
atacgctgctgctgtcagcgtctccaaggcaggaccagcctgatactgggtctggaaactagagtctacacagagattcagctgcaaaagctgatgtaga |
36457333 |
T |
|
| Q |
223 |
atgctgtcagatttatatgcaggcgacgagtttagagcagcatatcacctaatttggcgatgtgtcgaaagtccaggttttcgggtggaagctcctgcag |
322 |
Q |
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| T |
36457334 |
atgctgtcagatttatatgcaggcgacgagtttaaagtagcatatcacctaatttggcgatgtgtcgaaagtccaggttttcgtgtggaagctcctgcag |
36457433 |
T |
|
| Q |
323 |
aagaggctgcagtcaatgttgaatttaatcacaagaaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgagg |
422 |
Q |
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| T |
36457434 |
aagaggctgcagtcaatgttgaatttaatcacaagaaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgagg |
36457533 |
T |
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| Q |
423 |
aacatctattcttcggctgtcagtgaagtttagtggtttgtttggagttttatcagtggattggagtatcaattgtaactcatgtagatcctgtggttca |
522 |
Q |
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| T |
36457534 |
aacatctattcttcggctgtcagtgaagttttgtggtttggttggagttttatcagtggattggagtgtcaattgtaactcatgtagatcctgtggttca |
36457633 |
T |
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| Q |
523 |
tctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttgatctctatggattgctag |
622 |
Q |
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| T |
36457634 |
tctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttggtctctatggattgctag |
36457733 |
T |
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| Q |
623 |
aaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatggatgtcatcgaaaataggtagcagaccg |
709 |
Q |
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| T |
36457734 |
aaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatgaatgtcgtcgaaaataggtagcagaccg |
36457820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 358 - 561
Target Start/End: Complemental strand, 11629672 - 11629469
Alignment:
| Q |
358 |
aaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgaggaacatctattcttcggctgtcagtgaagtttagtg |
457 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||| | ||| |
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| T |
11629672 |
aaacattaggcctgcagatcataattcatcctttgtgttctgttccgacaataattagagcgagaaacatctattcttcggctatcaatgaagtgttgtg |
11629573 |
T |
|
| Q |
458 |
gtttgtttggagttttatcagtggattggagtatcaattgtaactcatgtagatcctgtggttcatctgctgcagcataatgtgtctttatggggagtga |
557 |
Q |
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| T |
11629572 |
gtttggttaaaggtttatcagtggattggagtgtctattgtaacttatgtagatcttatggtacatttgctgcaccataatgtgtctttgtggggtgtga |
11629473 |
T |
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| Q |
558 |
aaaa |
561 |
Q |
| |
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|||| |
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| T |
11629472 |
aaaa |
11629469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 580 - 659
Target Start/End: Complemental strand, 11628456 - 11628377
Alignment:
| Q |
580 |
tgttgttgtggtgagcggttgtttgatctctatggattgctagaaataatataatttttatggacagtattcctaatgtg |
659 |
Q |
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||||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
11628456 |
tgttgttgttgggagaggttgtttggtctctatatattgctagaaataatataatttttatggacaatatttctaatgtg |
11628377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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