View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16576_low_2 (Length: 452)
Name: NF16576_low_2
Description: NF16576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16576_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Original strand, 29467341 - 29467761
Alignment:
| Q |
16 |
ggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaacagcgatt |
115 |
Q |
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| T |
29467341 |
ggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaacagcgatt |
29467440 |
T |
|
| Q |
116 |
tcacagtgcaggtctgtaaagagtcactcgatgaatgatagtttagtgctacatattatctgttagtttagagcttagtcccgcaatgaatgattcttga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29467441 |
tcacagtgcaggtctgtaaagagtcactcgatgaatgatagtttagtgctacatattatctgttagtttagtgcttagtcccgcaatgaatgattcttga |
29467540 |
T |
|
| Q |
216 |
acccccttatgataggagatttgtggatttagatttcatgcatccacacagtcacgctgtcatcgatttgaattgtctagctaagatcaggcggtcctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467541 |
acccccttatgataggagatttgtggatttagatttcatgcatccacacagtcacgctgtcatcgatttgaattgtctagctaagatcaggcggtcctca |
29467640 |
T |
|
| Q |
316 |
tttcaactctatattttagtcttggattacagagttgaaactatgattgatctgatggtcctggttgcatgactgcttcaaataggtgattctcttgttg |
415 |
Q |
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| T |
29467641 |
tttcaactctatattttagtcttggattacagagttgaaactatgattgatctgacggtcctggttgcatgactgcttcaaataggtgattctcttgttg |
29467740 |
T |
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| Q |
416 |
caagaaatcaggatgagtttt |
436 |
Q |
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| T |
29467741 |
caagaaatcaggatgagtttt |
29467761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 14998494 - 14998904
Alignment:
| Q |
17 |
gaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaacagcgattt |
116 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||| |
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| T |
14998494 |
gaagaagtatttcagacggttaatttgcacgtttaacttttgttgttccagctgtctaagattgatatggctttgacaagtctcaaaacaaaagcaattg |
14998593 |
T |
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| Q |
117 |
cacagtgcaggtctgt-aaagagtcactcgatgaatgatagtttagtgctacatattatctgttagtttagagcttagtcccgcaatgaatga-----tt |
210 |
Q |
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|| ||||||||| ||| ||| | ||||||| |||||||||||||||||| || |||||||||||||||||| |||||||| || | |||||| || |
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| T |
14998594 |
caaagtgcaggtttgtgaaaaaatcactcgttgaatgatagtttagtgcaacgtattatctgttagtttagcgcttagtcttgccaagaatgattatttt |
14998693 |
T |
|
| Q |
211 |
cttgaacccccttatgataggagatttgtggatttagatttcatgcatccacacagtcacgctgtcatcgatttgaattgtctagctaagatcaggcggt |
310 |
Q |
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| T |
14998694 |
cttgaaccacctgctgataggagatttatgggtttagatttcttgcatccacacagtcac--------cgatttgaatcgtctaaccatgattggacggt |
14998785 |
T |
|
| Q |
311 |
cctcatttcaactctatattttagtcttggattacagagttgaaactatgattgatctgatggtcctggttgcatgactgcttcaaataggtgattctct |
410 |
Q |
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|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
14998786 |
ccacatttcaactctatgttttagtcttgatttacagagttgaaactatgattgatctaatggtcctggtcgcatgactgcttcaaatgggtgattttct |
14998885 |
T |
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| Q |
411 |
tgttgcaagaaatcaggat |
429 |
Q |
| |
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| T |
14998886 |
tgttgcaagaaatcaggat |
14998904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 14742042 - 14741932
Alignment:
| Q |
18 |
aagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaacagcgatttc |
117 |
Q |
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| T |
14742042 |
aagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgc |
14741943 |
T |
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| Q |
118 |
acagtgcaggt |
128 |
Q |
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||||||||||| |
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| T |
14741942 |
acagtgcaggt |
14741932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 14735067 - 14734977
Alignment:
| Q |
18 |
aagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaac |
108 |
Q |
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| T |
14735067 |
aagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgatacggctttgagaagtctcaaaacaac |
14734977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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