View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16576_low_5 (Length: 288)
Name: NF16576_low_5
Description: NF16576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16576_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 6855868 - 6856138
Alignment:
| Q |
2 |
aaggaattctcttaaaaattaaaaattatgagagtaagacttacttggtgtcaatgatcccgactatatatgtgtgtacgtatttgtacacctaaaaatc |
101 |
Q |
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| T |
6855868 |
aaggaattctcttaaaaattcaaaattatgagagtaagacttacttggtgtcaatgatcccgactatatatgtgtgtacgtatttgtacacctaaaaatc |
6855967 |
T |
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| Q |
102 |
atactcatgtttaaaatcatggttaactgtgttaaattaatatggttaattggttatacatcatcttgctatattcatcaaataatcattagatataatt |
201 |
Q |
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| T |
6855968 |
atactcatgtttaaaatcatggttaactgtgttaaattaatatggttaattggttatacatcatcttgctgtattcatcaaataatcattagatataatt |
6856067 |
T |
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| Q |
202 |
aaccatatatttaaattgtgttaactatttaaattgttatcaaattttgagaggaaatttgacgaatttta |
272 |
Q |
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| T |
6856068 |
aaccatatatttaaattgtgttaactatttaaattgttatcaaattttgagaggaaatgtgacgaatttta |
6856138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 8458154 - 8458198
Alignment:
| Q |
201 |
taaccatatatttaaattgtgttaactatttaaattgttatcaaa |
245 |
Q |
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| T |
8458154 |
taaccatatatttaaactgtgttaactattcaaattgttgtcaaa |
8458198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 30066822 - 30066870
Alignment:
| Q |
201 |
taaccatatatttaaattgtgttaactatttaaattgttatcaaatttt |
249 |
Q |
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| T |
30066822 |
taaccacatatttaaactgtgttaactatctaaattgttgtcaaatttt |
30066870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 45886836 - 45886879
Alignment:
| Q |
204 |
ccatatatttaaattgtgttaactatttaaattgttatcaaatt |
247 |
Q |
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| T |
45886836 |
ccatatatttaaattgtattaactatttaagttgttgtcaaatt |
45886879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 32642936 - 32642881
Alignment:
| Q |
194 |
atataattaaccatatatttaaattgtgttaactatttaaattgttatcaaatttt |
249 |
Q |
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|||||||||| |||||||||||| ||||||| | ||||||| ||||||||| |||| |
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| T |
32642936 |
atataattaatcatatatttaaactgtgttagccatttaaaatgttatcaactttt |
32642881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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