View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16577_high_1 (Length: 970)
Name: NF16577_high_1
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 896; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 18 - 959
Target Start/End: Complemental strand, 7295884 - 7294943
Alignment:
| Q |
18 |
accatttgcaatagaagccactttgcttagatttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295884 |
accatttgcaatagaagccactttgcttagatttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaata |
7295785 |
T |
|
| Q |
118 |
caaaaagctgatgaatttgctgagaatattataagggcaagaaagaaggaactttctttgcaaaattaagatgataaggaaaaatcaaatttgttaactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295784 |
caaaaagctgatgaatttgctgagaatattataagggcaagaaagaaggaactttctttgcaaaattaagatgataaggaaaaatcaaatttgttaactg |
7295685 |
T |
|
| Q |
218 |
tgttaatgaggcttacggatgagaatggaatttcatactcagataagtgtttgagggatatatgtttgaatttcgtattagccgggagagacacttctt- |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7295684 |
tgttaatgaggcttacggatgagaatggaatttcatactcagataagtgt--gagggatatatgtttgaatttcatattagccgggagagacacttcttc |
7295587 |
T |
|
| Q |
317 |
--tagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaaaatagtagagatttgcagggtggtgagtcaaagggaggga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295586 |
tttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaaaatagtagagatttgcagggtggtgagtcaaagggaggga |
7295487 |
T |
|
| Q |
415 |
ggatattcaaaaggtattaacaaggcatcaattcctacttatcagtatccaccacccacctgcataattatgcagatagccatatattatgaccacattg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295486 |
ggatattcaaaaggtattaacaaggcatcaattcctact-atcagtatccaccacccacctgcataattatgcagatagccatatattatgaccacattg |
7295388 |
T |
|
| Q |
515 |
tcgtcaacttcaaattaagctacactttcttaaccaccaaaacactccccaactacaactcaaaattactccatacatacacaggtctattgttatcaca |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295387 |
tcgtcaacttcaaattaagctacactttcttaaccaccaaaacactccccaactacaactcaaaattactccatacatacacaggtctattgttatcaca |
7295288 |
T |
|
| Q |
615 |
actgagattgaaccttgtctaatgtactgctgccaccacataattgcgagtgacatatacatttgatgttaacaagaattcaaagagagttaaccttcaa |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7295287 |
actgagattgaaccttgtctaatgtactgctgccaccacataattgcgagtgacatatacatttgacgttaacaagaattcaaagagagttaaccttcaa |
7295188 |
T |
|
| Q |
715 |
ccaacatttcaaaaatctagtagaaaacaaaatgagttgggtaggaactcacgagctctaatttgacaacagcagggtaaacatccaggtagacaccaag |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295187 |
ccaacatttcaaaaatctagtagaaaacaaaatgagttgggtaggaactcacgagctctaatttgacaacagcagggtaaacatccaggtagacaccaag |
7295088 |
T |
|
| Q |
815 |
tgaaaacaaaattgaagaggaattaattttgaaagaaactaaattaaaattgtaataacagttaggaaatagtggtgataaaaataagactcattgtttt |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7295087 |
tgaaaacaaaattgaagaggaattaattttgaaagaaactaaattaaaattgtaataacagttaggaaataatggtgataaaaataagactcattgtttt |
7294988 |
T |
|
| Q |
915 |
tcattaacagcacacataatctttaagtgagacgtctgatgatgt |
959 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7294987 |
tcattaacagcacacataatctttaagtgagacgtctcatgatgt |
7294943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 599 - 901
Target Start/End: Complemental strand, 7291579 - 7291275
Alignment:
| Q |
599 |
gtctattgttatcacaactgagattgaaccttgtctaatgtactgctgccaccacataattgcgagtgacatatacatttgatgttaacaagaattcaaa |
698 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||| |||||| |||| | ||| |||||||| |||| | |||| || |
|
|
| T |
7291579 |
gtctattgttatcacaactgagactaaaccttgtctactgtactgctgccaacacccaattgcaagtgccgtattcatttgatactaaccggcattcgaa |
7291480 |
T |
|
| Q |
699 |
gagagttaaccttcaaccaacatttcaaaaatctagtagaaaacaaaatgagttgggtagga---actcacgagctctaatttgacaacagcagggtaaa |
795 |
Q |
| |
|
||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
7291479 |
gagagttaatcttccaccagcatttcaaaattctagtagaaaacaaaatgagttggataggaggaactcacaagctctaatttgacaacagcagggtaaa |
7291380 |
T |
|
| Q |
796 |
catccaggtagacaccaagtgaaaacaaaattgaagaggaattaattttgaaagaaactaaattaaaattgtaataacagttaggaaatagtggtgataa |
895 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||| || |||||| |
|
|
| T |
7291379 |
catctaggtagacaccaagtgaaaacaaaattgaagaggaattaattttgaaagaaact-aattaaaactataataacagtcaggaaataatgatgataa |
7291281 |
T |
|
| Q |
896 |
aaataa |
901 |
Q |
| |
|
|||||| |
|
|
| T |
7291280 |
aaataa |
7291275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 49 - 412
Target Start/End: Complemental strand, 13897817 - 13897455
Alignment:
| Q |
49 |
tttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatatta |
148 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
13897817 |
tttgtgtatggaaggctatgaggttt--cttaacttaggtatggaaagaaagctc--aagaaatcaatacaaaaagttgatgaatttgctgagaatgtta |
13897722 |
T |
|
| Q |
149 |
taagggcaagaaagaaggaactttctttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatggaat |
248 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
13897721 |
taagggcaagaaagaaagaactttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaa |
13897622 |
T |
|
| Q |
249 |
ttcatactcagataagtgtttgagggatatatgtttgaatttcgtattagccgggagagacacttctttagttgctttgaggcggcttttctggttgctt |
348 |
Q |
| |
|
|| || |||||||||| |||||||||||| ||| | |||||| ||||||| |||||||||||||||| ||||||||| || || ||||||||||| || |
|
|
| T |
13897621 |
gtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggtt |
13897522 |
T |
|
| Q |
349 |
gatcataataatgaaatggaggaaaaaa---tagtagagatttgcagggtggtgagtcaaagggagg |
412 |
Q |
| |
|
||||| ||| ||||| | ||||| |||| ||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
13897521 |
gatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgtgtcaaagggagg |
13897455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 13887387 - 13887755
Alignment:
| Q |
49 |
tttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatatta |
148 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||||||| |||||| || ||| || |||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
13887387 |
tttgtgtatggaaggctatgaggttt--cttaacttaggtatggagagaaag--ttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgtta |
13887482 |
T |
|
| Q |
149 |
taagggcaagaaagaaggaactttctttgcaaaatta------agatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaa |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||| || || | |||||||||| ||||||| |||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
13887483 |
taagggcaagaaagaaagaactttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaa |
13887582 |
T |
|
| Q |
243 |
tggaatttcatactcagataagtgtttgagggatatatgtttgaatttcgtattagccgggagagacacttctttagttgctttgaggcggcttttctgg |
342 |
Q |
| |
|
||||| | || |||||||||| ||||||||||||||| | | ||| ||||||| |||||||||||||||| ||||||||| || || |||||||| |
|
|
| T |
13887583 |
tggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctgg |
13887682 |
T |
|
| Q |
343 |
ttgcttgatcataataatgaaatggaggaaaaaa---tagtagagatttgcagggtggtgagtcaaagggagg |
412 |
Q |
| |
|
|| ||| |||| ||| ||||| ||||||| |||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
13887683 |
ttacttaatcagaatcatgaagtggaggagaaaatattagaagagatttgcagggttgtgagtcaaagggagg |
13887755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 678 - 793
Target Start/End: Complemental strand, 23327694 - 23327579
Alignment:
| Q |
678 |
tgatgttaacaagaattcaaagagagttaaccttcaaccaacatttcaaaaatctagtagaaaacaaaatgagttgggtaggaactcacgagctctaatt |
777 |
Q |
| |
|
|||| ||||| ||||||| ||||||| ||| ||| |||| ||||| |||||| |||| ||||||||||||||||| ||| |||||| | |||||||| |
|
|
| T |
23327694 |
tgatattaaccagaattcgaagagagataatctttcaccagcatttaaaaaatatagtgcaaaacaaaatgagttggatagaaactcataaactctaatt |
23327595 |
T |
|
| Q |
778 |
tgacaacagcagggta |
793 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
23327594 |
tgacaacatcagggta |
23327579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 7291778 - 7291699
Alignment:
| Q |
185 |
aagatgataaggaaaaa--tcaaatttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataa |
263 |
Q |
| |
|
||||||||||||||||| ||| ||| || || |||||| |||||||||| ||||||||||| || |||||| |||||||| |
|
|
| T |
7291778 |
aagatgataaggaaaaaaatcagattcgtaaa-tgtgtttatgaggcttaaggatgagaatgaaaattcatattcagataa |
7291699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 47 - 399
Target Start/End: Complemental strand, 1034876 - 1034525
Alignment:
| Q |
47 |
gatttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatat |
146 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||||| | |
|
|
| T |
1034876 |
gatttgtgtatggaaagctatgaggttt--cttaacttaggtatggaaagaaagctt--aagaaatccatacaaaaagttgatgaatttgctgagaatgt |
1034781 |
T |
|
| Q |
147 |
tataagggcaagaaagaaggaactttctttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatgga |
246 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1034780 |
tataagggcaagaaagaaagaactttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatgga |
1034681 |
T |
|
| Q |
247 |
atttcatactcagataagtgtttgagggatatatgtttgaatttcgtattagccgggagagacacttctttagttgctttgaggcggcttttctggttgc |
346 |
Q |
| |
|
| || || |||||||||| |||||||||||| ||| | ||||| ||||||| |||||||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
1034680 |
aagtcttattcagataagtttttgagggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttgg |
1034581 |
T |
|
| Q |
347 |
ttgatcataataatgaaatggaggaaaaaa---tagtagagatttgcagggtggtg |
399 |
Q |
| |
|
||||||| ||| ||||| | ||||| |||| ||| ||| ||||||||||||||| |
|
|
| T |
1034580 |
ttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggtggtg |
1034525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 206 - 404
Target Start/End: Complemental strand, 28667001 - 28666800
Alignment:
| Q |
206 |
atttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataagtgtttgagggatatatgtttgaatttcgtattagccgggag |
305 |
Q |
| |
|
||||||||||||| || |||| | | | |||||||||||||| | | || |||||||||| | |||||||||||||| ||||||| || |||| ||||| |
|
|
| T |
28667001 |
atttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggag |
28666902 |
T |
|
| Q |
306 |
agacacttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaa---aatagtagagatttgcagggtggtgagt |
402 |
Q |
| |
|
||||||||||| || |||||||| || |||| ||||| |||||||| ||| ||||| ||||||| || | ||| |||||| |||| |||||||||| |
|
|
| T |
28666901 |
agacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagt |
28666802 |
T |
|
| Q |
403 |
ca |
404 |
Q |
| |
|
|| |
|
|
| T |
28666801 |
ca |
28666800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 591 - 647
Target Start/End: Complemental strand, 45343343 - 45343287
Alignment:
| Q |
591 |
atacacaggtctattgttatcacaactgagattgaaccttgtctaatgtactgctgc |
647 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
45343343 |
atacactggtctattgttatcacaactgagtttgaatcttgtctaatgaactgctgc |
45343287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 852
Target Start/End: Complemental strand, 26312694 - 26312611
Alignment:
| Q |
769 |
gctctaatttgacaacagcagggtaaacatccaggtagacaccaagtgaaaacaaaattgaagaggaattaattttgaaagaaa |
852 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| ||| || | || |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
26312694 |
gctctaatttgacaacatcaggataaacatctcggtggacccctattggaaactaaattgaagagaaattaattgtgaaagaaa |
26312611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 751 - 852
Target Start/End: Complemental strand, 26289860 - 26289759
Alignment:
| Q |
751 |
ttgggtaggaactcacgagctctaatttgacaacagcagggtaaacatccaggtagacaccaagtgaaaacaaaattgaagaggaattaattttgaaaga |
850 |
Q |
| |
|
|||||||| ||| ||| ||||| ||||| |||||| ||||||||||||| ||| ||| || | ||||||| ||||||||| | |||||||| | ||||| |
|
|
| T |
26289860 |
ttgggtagtaacacacaagctcaaattttacaacatcagggtaaacatctcggtggacccctattgaaaaccaaattgaagtgaaattaattgtaaaaga |
26289761 |
T |
|
| Q |
851 |
aa |
852 |
Q |
| |
|
|| |
|
|
| T |
26289760 |
aa |
26289759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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