View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16577_high_13 (Length: 381)
Name: NF16577_high_13
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 34095615 - 34095956
Alignment:
| Q |
13 |
cattccaaacatagctagtgagttagacacttagttagaaagtgttaagacatagaaggtgctagtattaattaattaatttgatagataatcatgctaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095615 |
cattccaaacatagctagtgagttagacacttagttagaaagtgttaagacatagaaggtgctagtattaattaattaatttgatagataatcatgctaa |
34095714 |
T |
|
| Q |
113 |
taagaatttgtttgactattagcatttagcacaatagaactaccattgttggtatttaaatagtactgtactattgcaaagcactttttaggtctagctg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095715 |
taagaatttgtttgactattagcatttagcacaatagaactaccattgttggtatctaaatagtactgtactattgcaaagcactttttaggtctagctg |
34095814 |
T |
|
| Q |
213 |
agaagatgccatggagaataaaataaggtctatgcgtataatggaacaaacctaggatttgattagattccacttaaatacaatgaatatatttgattat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095815 |
agaagatgccatggagaataaaataaggtctatgcgtataatggaacaaacctaggatttgattagattccacttaaatacaatgaatatatttgattat |
34095914 |
T |
|
| Q |
313 |
attcttacttgatctctatattcttcttctaatttcgtcaac |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095915 |
attcttacttgatctctatattcttcttctaatttcgtcaac |
34095956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University