View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_15 (Length: 373)
Name: NF16577_high_15
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 113 - 360
Target Start/End: Original strand, 17523758 - 17524014
Alignment:
| Q |
113 |
ttgttcataatattaatagtatttctcatgaaaaagggtcatctaatttgcttaagccacaactaatcaacta------aa-----tgttaattttaaca |
201 |
Q |
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| T |
17523758 |
ttgttcataatattaatagtgtatctcataaaaa--ggtcatctaatttgcttaaggcacaactaatcaactacttaataactttctgttaattttaaca |
17523855 |
T |
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| Q |
202 |
acttcattagcagcaccacttatgtctctcaaccactccaaaacacattattacattcaccactataaaagactcattaattttaatcatccaaacaaca |
301 |
Q |
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| T |
17523856 |
acttcattagcaccaccacttatgtctcttaaccactccaacacacattattacattcaccactataaaagactcattaattttaatcatccaaacaaca |
17523955 |
T |
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| Q |
302 |
attatcttctcaattaataccaaaagaaagaacttaattagcctcaacaagatgtattt |
360 |
Q |
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| T |
17523956 |
attatcttctcaattaataccaaaagaaagaacttaattagcctcaacaagatgtattt |
17524014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 17523677 - 17523738
Alignment:
| Q |
38 |
gtaatcagatgaacgtttaaacttcattagcactaaaaaatgttacaccacatgctagtgtta |
100 |
Q |
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| T |
17523677 |
gtaatcagatgaatgtttaaacttcattagcacaaaaaattgttaca-cacatactagtgtta |
17523738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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