View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_18 (Length: 311)
Name: NF16577_high_18
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_18 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 32918 - 32617
Alignment:
| Q |
1 |
atactcgtagtgttgttcaagtaatctagtgtatggagctcgtacaatttaaatatgaataagtagagtgtctgagatttaaatattgaactctgcgtat |
100 |
Q |
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| T |
32918 |
atactcgtagtgttgttcaagtaatctagtgtatggagctcgtacaatttaaatatgaataagtagagtgtctgagattcaaatattgaactctgcgtat |
32819 |
T |
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| Q |
101 |
atta---------cttatcaattgagttgagctcacggaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaag |
191 |
Q |
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| T |
32818 |
attatgcattgtccttatcaattgagttgagttcacagaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaag |
32719 |
T |
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| Q |
192 |
acaaagttttagtataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccag |
291 |
Q |
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| T |
32718 |
acaaagttttagtataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccag |
32619 |
T |
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| Q |
292 |
ca |
293 |
Q |
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|| |
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| T |
32618 |
ca |
32617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 25480 - 25407
Alignment:
| Q |
220 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagca |
293 |
Q |
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| T |
25480 |
ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagca |
25407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 40077 - 40007
Alignment:
| Q |
220 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatcca |
290 |
Q |
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| T |
40077 |
ttagaacaattggatacttagcaagaaggtaaatagcccacatggatgaaagggaagtagacatatatcca |
40007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 4739 - 4801
Alignment:
| Q |
215 |
ttttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagt |
277 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
4739 |
tttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagt |
4801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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