View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_19 (Length: 288)
Name: NF16577_high_19
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 30479137 - 30479406
Alignment:
| Q |
1 |
ttatattcaaaaaagtatataggacacgtattcttgttgcagaagataacgagtaaatgataactttataacaatcaaataaaaaggggtattttggagg |
100 |
Q |
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| T |
30479137 |
ttatattcaaaaaagtatataggacacgtattcttgttgcacaagataacgagtaaatgataactttataacaattaaataaaaaggggtattttggagg |
30479236 |
T |
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| Q |
101 |
gtttctttaataatttcacatagctgaaaatgaatagtcacaggttttagatacacacaccgtagcatnnnnnnnnttacacataaattcatcaagtgtg |
200 |
Q |
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| T |
30479237 |
gtttctttaataatttcacatagctgaaaataaatagtcacagcttttagatacacacaccgtagcat-aaaaaaattacacataaattcatcaagtgtg |
30479335 |
T |
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| Q |
201 |
acattttaaggaattaaacattagagtaaattaatcaactgttgcttatgtgatataacatatatatggag |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30479336 |
acattttaaggaattaaacattagagtaaattaatcaactgttgcttatgtgatataacatatatatggag |
30479406 |
T |
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