View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_20 (Length: 288)
Name: NF16577_high_20
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 54951344 - 54951169
Alignment:
| Q |
94 |
atgagatgaataagaaacggacgaagggcatataaaagtgaga-aaaatatcataatacaaaatcccaacagtt-aatcgatgattcttgtggttagata |
191 |
Q |
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| T |
54951344 |
atgagatgaataagaaacggacgaagggcatataaaagtgagataaaatatcataatacaaaatcccaacagttgaatcgatgattcttgtggttagata |
54951245 |
T |
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| Q |
192 |
gattaataatttattgaactaacttatataagcttatttgatcaaatgaaaagtgtttggtaaacaaacttttctt |
267 |
Q |
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| T |
54951244 |
gattaataatttattgaactaacttatataagcttgtttgatcaaatgaaaagtgtttgctaaataaacttttctt |
54951169 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 46334697 - 46334737
Alignment:
| Q |
218 |
tataagcttatttgatcaaatgaaaagtgtttggtaaacaa |
258 |
Q |
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| T |
46334697 |
tataagcttgtttgatcaaatgagacgtgtttggtaaacaa |
46334737 |
T |
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