View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_23 (Length: 256)
Name: NF16577_high_23
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 56 - 256
Target Start/End: Original strand, 2392411 - 2392612
Alignment:
| Q |
56 |
agtttatatgttttaaggaaataggtaaaatacacatatcatttgannnnnnnaattacttttctttctatattacatcaacagttataaaggatatatt |
155 |
Q |
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| T |
2392411 |
agtttatatgttttaaggaaataggtaaaatacacatatcatttgatttttttaattacttttctttctatattacatcaacagttataaaggatatatt |
2392510 |
T |
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| Q |
156 |
tttatacggtcgttaatcaacttgtactcctcatgaatgatgacgtgagtttgaag-tatgaagaagagaagcaatgcagcacagaacggtgatacctta |
254 |
Q |
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| T |
2392511 |
tttatacggttgttaatcaacttgtactcctcatgaatgatgacgtgagtttgaagttagaaagaagagaagcaatgcagcacagaacggtgatacctta |
2392610 |
T |
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| Q |
255 |
tc |
256 |
Q |
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|| |
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| T |
2392611 |
tc |
2392612 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 20233383 - 20233351
Alignment:
| Q |
130 |
acatcaacagttataaaggatatatttttatac |
162 |
Q |
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| T |
20233383 |
acatcaacagttataaaagatatatttttatac |
20233351 |
T |
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