View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16577_high_32 (Length: 217)
Name: NF16577_high_32
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_32 |
 | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 15707196 - 15707402
Alignment:
| Q |
1 |
cctcacgtttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaaca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15707196 |
cctcaggtttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaata |
15707295 |
T |
|
| Q |
101 |
ctatatatctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15707296 |
ctatatatctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttc |
15707395 |
T |
|
| Q |
201 |
atctctc |
207 |
Q |
| |
|
|||||| |
|
|
| T |
15707396 |
ttctctc |
15707402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 3948 - 4146
Alignment:
| Q |
9 |
ttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948 |
ttcatatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
4047 |
T |
|
| Q |
109 |
ctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcatctctc |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
4048 |
ctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
4146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 13860 - 14058
Alignment:
| Q |
9 |
ttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13860 |
ttcatatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
13959 |
T |
|
| Q |
109 |
ctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcatctctc |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
13960 |
ctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
14058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 25121 - 24923
Alignment:
| Q |
9 |
ttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25121 |
ttcatatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatat |
25022 |
T |
|
| Q |
109 |
ctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcatctctc |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
25021 |
ctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
24923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 44495343 - 44495548
Alignment:
| Q |
1 |
cctcacgtttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaaca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495343 |
cctcacatttcatatacttccatcaatatcatatcctttcaattacctcttt-aactacaaacaattttcaaactaaccaatcaacatccatcgctaaca |
44495441 |
T |
|
| Q |
101 |
ctatatatctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttc |
200 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44495442 |
ctgtatatctcttcaaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttc |
44495541 |
T |
|
| Q |
201 |
atctctc |
207 |
Q |
| |
|
|||||| |
|
|
| T |
44495542 |
ttctctc |
44495548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3377253 - 3377356
Alignment:
| Q |
1 |
cctcacgtttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaaca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3377253 |
cctcacgtttcatataattccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaaca |
3377352 |
T |
|
| Q |
101 |
ctat |
104 |
Q |
| |
|
|||| |
|
|
| T |
3377353 |
ctat |
3377356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 3378173 - 3378273
Alignment:
| Q |
107 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcatctct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3378173 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
3378272 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
3378273 |
c |
3378273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 1360 - 1260
Alignment:
| Q |
107 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcatctct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1360 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
1261 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
1260 |
c |
1260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 53915 - 53871
Alignment:
| Q |
163 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53915 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
53871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University