View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_34 (Length: 213)
Name: NF16577_high_34
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 52435327 - 52435130
Alignment:
| Q |
1 |
gaatttattttttgaaagaactctataatttgttctctctggcatttttaagaccggcaataaagtttataattaaataaataattgttgaaatgtaaga |
100 |
Q |
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| T |
52435327 |
gaatttattttttgaaagaactctataatttcttctctatggcatttttaagacaggcaataaagtttataattaaataaataattgttgaaatgtaaga |
52435228 |
T |
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| Q |
101 |
atatcaagctaacataagacagatttagtttgtacacnnnnnnnntcgactcacactcaggaagatactatagcacgaccggccatgttgatattact |
198 |
Q |
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| T |
52435227 |
atatcaggctaacataagatagatttagtttgtacacaaaaaaaatcgactcacactcaggatgatactatagcacgaccggccatgttgatattact |
52435130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 52433709 - 52433631
Alignment:
| Q |
8 |
ttttttgaaagaactctataatttgttctctctggcatttttaagaccggcaataaagtttataattaaataaataatt |
86 |
Q |
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||||||||||||||||||||||||||||| ||| ||||| ||||| | ||||||||| ||||| |||||||||||||| |
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| T |
52433709 |
ttttttgaaagaactctataatttgttctttctatcatttgtaagatctgcaataaagattatacttaaataaataatt |
52433631 |
T |
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