View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_high_7 (Length: 493)
Name: NF16577_high_7
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Original strand, 30702116 - 30702582
Alignment:
| Q |
12 |
caaaggaaaaaatgcagtgaaaattgcatattggcaccatactttccatcaagcagaagaagagaattcaaagcagtgcacaaagtgtttggtgttagca |
111 |
Q |
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| T |
30702116 |
caaaggaaaaaatgcagtgaaaattgcatattagcaccatactttccatcaaacagaagtagagaattcaaagcagtgcacaaagtgtttggtgttagca |
30702215 |
T |
|
| Q |
112 |
acataacaaagtttgtaaggaatgctcaagagggagatagaagaaaagttgtggattcattgatatgggaagcactttctaggcaaaaggatccaataaa |
211 |
Q |
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| T |
30702216 |
acataacaaagtttgtaaggaatgctcaagagggagatagaagaaaagttgtggattcattgatatgggaagcactttctaggcaaaaggatccaataaa |
30702315 |
T |
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| Q |
212 |
tggttcttatggagagtatacaaaagtttacaatgagtataaaagattatttgatgaacttaagatgtttagagatcaccaaaaccaattggtgcaagtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30702316 |
tggttcttatggagagtatacaaaagtttacaatgagtataaaagattatttgatgaacttaagatgtttagagatcatcaaaaccaattggtgcaagtg |
30702415 |
T |
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| Q |
312 |
caacctcaagggaaagttagagcagaaacacctgatcataatgctgtagattatcatcatcttcatcatggaaatcataagaatggtattgttgattcta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702416 |
caacctcaagggaaagttagagcagaaacacctgatcataatgctgtagattatcatcatcttcatcatggaaatcataagaatggtattgttgattcta |
30702515 |
T |
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| Q |
412 |
ctaccatttataatacatattgttcaaattatttacaagatcttgatagtttgaggacagaagttgt |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30702516 |
ctaccatttataatacatattgttcaaattatttacaagatcttgatagtttgaggacagaagttgt |
30702582 |
T |
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