View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16577_high_9 (Length: 439)

Name: NF16577_high_9
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16577_high_9
NF16577_high_9
[»] chr2 (3 HSPs)
chr2 (1-423)||(8020942-8021359)
chr2 (311-415)||(22792281-22792385)
chr2 (375-415)||(22965811-22965851)
[»] chr3 (36 HSPs)
chr3 (1-419)||(28151760-28152175)
chr3 (1-419)||(17744115-17744526)
chr3 (1-419)||(19045435-19045846)
chr3 (63-415)||(11421393-11421743)
chr3 (147-419)||(27920463-27920730)
chr3 (279-423)||(27954559-27954703)
chr3 (279-419)||(30993721-30993861)
chr3 (4-187)||(28037552-28037737)
chr3 (279-419)||(8538720-8538860)
chr3 (143-418)||(27430588-27430870)
chr3 (69-206)||(8539081-8539218)
chr3 (279-418)||(28037895-28038034)
chr3 (279-417)||(28163032-28163170)
chr3 (277-418)||(28479461-28479602)
chr3 (277-418)||(28508644-28508785)
chr3 (279-418)||(28057568-28057707)
chr3 (279-418)||(28067993-28068132)
chr3 (1-134)||(11421098-11421232)
chr3 (279-419)||(18078836-18078976)
chr3 (5-135)||(27458741-27458873)
chr3 (374-419)||(27458432-27458477)
chr3 (354-418)||(26138821-26138885)
chr3 (66-162)||(26139089-26139185)
chr3 (279-418)||(26204229-26204365)
chr3 (63-162)||(28162792-28162891)
chr3 (1-97)||(28479797-28479895)
chr3 (1-97)||(28508980-28509078)
chr3 (381-418)||(26109937-26109974)
chr3 (61-162)||(26110202-26110303)
chr3 (61-166)||(26127278-26127383)
chr3 (381-418)||(28187144-28187181)
chr3 (144-188)||(18076983-18077027)
chr3 (303-418)||(28136724-28136839)
chr3 (1-97)||(28186029-28186127)
chr3 (61-166)||(26177328-26177433)
chr3 (90-162)||(26204494-26204566)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-419)||(1850-2264)
[»] scaffold1142 (1 HSPs)
scaffold1142 (61-152)||(530-621)
[»] scaffold0257 (2 HSPs)
scaffold0257 (303-418)||(19507-19622)
scaffold0257 (1-89)||(19187-19277)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 8020942 - 8021359
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaaccttcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagat 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020942 cttaagttatctcatcgcccttttcattttgaagttaaccttcttctttcccaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagat 8021041  T
Q  101 caaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021042 caaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaagg 8021141  T
Q  201 tattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagag 300  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  8021142 tattttattgcatcatttttttaaaattaattttctagtgctcaaatatgcataaacattatttcatgtac-----tctcaggggaaccttctcaaagag 8021236  T
Q  301 atgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgattt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8021237 atgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctctgttgactgattt 8021336  T
Q  401 ccttgttaagcatccttcatttc 423  Q
    |||||||||||||||||||||||    
T  8021337 ccttgttaagcatccttcatttc 8021359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 22792281 - 22792385
Alignment:
Q  311 aagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaag 410  Q
    ||||||| |||| ||||||| | ||||||||||| | || || ||| ||||| |||| | |   ||||| ||||||||||||||||||||| ||||||||    
T  22792281 aagttctccttgtattgtcaaatgggagcttgagcaactggtctccgagaattatttggattacgagaacttgtctttgttgactgatttctttgttaag 22792380  T
Q  411 catcc 415  Q
     ||||    
T  22792381 tatcc 22792385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 22965811 - 22965851
Alignment:
Q  375 gagaaattgtctttgttgactgatttccttgttaagcatcc 415  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  22965811 gagaacttgtctttgttgactgatttctttgttaagtatcc 22965851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 28151760 - 28152175
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaacct-tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaaga 99  Q
    |||||||||||||||||||||||  ||||||||||| | || |||| |||| || ||||| ||||||||||||||||||||  |||||||||||| |||     
T  28151760 cttaagttacctcatcgccctttttattttgaagtttagctctcttgtttcccatcttttgtcagtttctctaaatgatgataatgtcatgaaagcaagc 28151859  T
Q  100 tcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaag 199  Q
    ||||||| |||| | |||||| | ||||| ||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| || || |||    
T  28151860 tcaaatactgaggatcagttttcaaaggatgataacatattagtttccaaatcaagaccctcttctattgcatctcagtttccttcaaagccttctgaag 28151959  T
Q  200 gtattttattgc-atcannnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaag 298  Q
    |||||||||| |  |           ||||||||| || ||||| ||||||||||||  ||| |||| | |||     | |||||||| ||||||||||     
T  28151960 gtattttatttctttgttttatttttaattaatttacttgtgcttaaatatgcataattattctttcctatac-----tttcaggggacccttctcaaat 28152054  T
Q  299 agatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgat 398  Q
    |||||||||||||||||||||||   |||||||  ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||     
T  28152055 agatgaagatttaagttcttcttttgttgtcaccggggagcttgagaatctagtctccaataatcatttggctattgagaaattgtctttgttgactgac 28152154  T
Q  399 ttccttgttaagcatccttca 419  Q
    |||||||||||||||||||||    
T  28152155 ttccttgttaagcatccttca 28152175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 17744526 - 17744115
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaag 98  Q
    |||||||||||||||||| |||| |||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  ||||||||||    
T  17744526 cttaagttacctcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaag 17744427  T
Q  99 atcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaa 198  Q
     |||||||||||| | || ||||| ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |    
T  17744426 ctcaaatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactgga 17744327  T
Q  199 ggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaag 298  Q
    ||||||||||||| |||         |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||     
T  17744326 ggtattttattgcttcattttatct-aattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa- 17744234  T
Q  299 agatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgat 398  Q
      | |||||||| ||||||||||   ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||    
T  17744233 --aagaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgat 17744136  T
Q  399 ttccttgttaagcatccttca 419  Q
    ||| |||||||||||||||||    
T  17744135 ttctttgttaagcatccttca 17744115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 19045846 - 19045435
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaag 98  Q
    |||||||||||||||||| |||| |||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  ||||||||||    
T  19045846 cttaagttacctcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaag 19045747  T
Q  99 atcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaa 198  Q
     |||||||||||| | || ||||| ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |    
T  19045746 ctcaaatattgaggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactgga 19045647  T
Q  199 ggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaag 298  Q
    ||||||||||||| |||         |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||     
T  19045646 ggtattttattgcttcattttatct-aattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa- 19045554  T
Q  299 agatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgat 398  Q
      | |||||||| ||||||||||   ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||    
T  19045553 --aagaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgat 19045456  T
Q  399 ttccttgttaagcatccttca 419  Q
    ||| |||||||||||||||||    
T  19045455 ttctttgttaagcatccttca 19045435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 63 - 415
Target Start/End: Original strand, 11421393 - 11421743
Alignment:
Q  63 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 162  Q
    |||||||| ||||||||| | | ||| ||||||||||||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  163 tctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca------nnnnnnnnaaattaattttctagtgctcaaatatgcataaa 256  Q
    | ||||| |||||||| ||||| |||  ||  | ||||||||||||||| |||              || || ||||| | ||||  ||||||||||||     
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaattttattttattgtgcataaatatgcataat 11421592  T
Q  257 cattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaag---ggagcttgagaatctagtt 353  Q
     |||||||| | |||     | |||||||| |||||||||| || |||||||||      ||||||  ||||||||||   |||||||||||||||||||    
T  11421593 tattatttcctatac-----tttcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtt 11421681  T
Q  354 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatcc 415  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11421682 tccaagaaccatttggctattgagaacttgtctttgttgactgaattccttgttaagcatcc 11421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 147 - 419
Target Start/End: Original strand, 27920463 - 27920730
Alignment:
Q  147 caaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaa 245  Q
    |||||||||| |||||||||||| |||||||| |||||||||| || || ||||||||||||||  |||          ||||| ||||||  |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  246 atatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgaga 345  Q
    ||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||    
T  27920562 atatgcataattattctttcctatactttca-----ggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgaga 27920656  T
Q  346 atctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 419  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27920657 atctagtctccaagaagcatttggctattgagaacttgtctttgttgactgacttccttgttaagcatccttca 27920730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 27954559 - 27954703
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttcatttc 423  Q
    | ||||||||||||||||||||||| |||||||||||||||||||    
T  27954659 acttgtctttgttgactgatttcctagttaagcatccttcatttc 27954703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 30993721 - 30993861
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttca 419  Q
    | ||||  |||||||| |||||||||||||| |||||||||    
T  30993821 acttgtacttgttgacggatttccttgttaatcatccttca 30993861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 28037552 - 28037737
Alignment:
Q  4 aagttacctcatcgccctttgcattttgaagttaacctt-cttctttctcaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaagatc 101  Q
    ||||||||||||| |||||| |||||||||||| | ||  |||||||  |||||| | | |||||| || |||||||||  |||||||||||||||| ||    
T  28037552 aagttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttctgttcagtttatccaaatgatgataatgtcatgaaagtaagttc 28037651  T
Q  102 aaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaa 187  Q
    |||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  28037652 aaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctcttctattgcatctcattttccttcaa 28037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 279 - 419
Target Start/End: Complemental strand, 8538860 - 8538720
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttca 419  Q
    |  |||| ||||||||  ||||||||||||| |||||||||    
T  8538760 acatgtccttgttgaccaatttccttgttaaccatccttca 8538720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 418
Target Start/End: Complemental strand, 27430870 - 27430588
Alignment:
Q  143 tttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca-nnnnnnnnaaattaattttctagtgc 241  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| ||||||||||| |||          |||||||||||| ||||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgcttcattgtagttttaattaattttcttgtgc 27430771  T
Q  242 tcaaatatgcataaacattatttcatgtactctcatctcaggggaacct------tctcaaagagatgaagatttaagttcttcttgcattgtcacaagg 335  Q
    | || || ||||||  ||  | |  | |||| |  |  |||||||||||      ||||||| ||||||| |||| ||||| ||||    |||||||| |    
T  27430770 tgaagtaggcataattatattgttctttactatacttacaggggaaccttctcaatctcaaatagatgaatattttagttcgtctttggctgtcacaaag 27430671  T
Q  336 gagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    || || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  27430670 gaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgttgactgatttccttgttaagcatccttc 27430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 8539218 - 8539081
Alignment:
Q  69 tctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctatt 168  Q
    |||||||||||| | || |||||||||||| ||||||||| || |  ||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||    
T  8539218 tctaaatgatgatgttgccatgaaagtaagctcaaatattcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtatt 8539119  T
Q  169 gaatctcagtgtccttcaaagtctactcaaggtatttt 206  Q
      |||||||| |||||||||| || || ||||||||||    
T  8539118 ccatctcagtctccttcaaagccttctgaaggtatttt 8539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 28037895 - 28038034
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  28037995 atttgtctttgttgactgatttctttgttaagcatccttc 28038034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 417
Target Start/End: Original strand, 28163032 - 28163170
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 377  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  378 aaattgtctttgttgactgatttccttgttaagcatcctt 417  Q
    || ||||||||||||||||||||| |||||||||||||||    
T  28163131 aacttgtctttgttgactgatttctttgttaagcatcctt 28163170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 418
Target Start/End: Complemental strand, 28479602 - 28479461
Alignment:
Q  277 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 376  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  377 gaaattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    ||| |||||||||||||||| ||||||||||| | |||||||    
T  28479502 gaacttgtctttgttgactgctttccttgttaggaatccttc 28479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 418
Target Start/End: Complemental strand, 28508785 - 28508644
Alignment:
Q  277 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 376  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  377 gaaattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    ||| |||||||||||||||| ||||||||||||| |||||||    
T  28508685 gaacttgtctttgttgactgttttccttgttaagaatccttc 28508644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 28057568 - 28057707
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28057568 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28057667  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28057668 acgtgtctttgttgactgatttctttgttaaacatccttc 28057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 28067993 - 28068132
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28067993 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28068092  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28068093 acgtgtctttgttgactgatttctttgttaaacatccttc 28068132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 11421098 - 11421232
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaacct-tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaaga 99  Q
    ||||||||||  |||| |||||| ||||| |||||| | || ||||||||| |||  ||| |||||| ||||||||||||| | ||||||||||| |||     
T  11421098 cttaagttacgacatcacccttttcatttagaagttgaactctcttctttcccactgtttgtcagttgctctaaatgatgatgctgtcatgaaagcaagc 11421197  T
Q  100 tcaaatattgagcaacagtttcccaaggaagatga 134  Q
     |||||||||||||||| || || ||||| |||||    
T  11421198 acaaatattgagcaacatttacctaaggatgatga 11421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 419
Target Start/End: Complemental strand, 18078976 - 18078836
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| ||||| ||  ||||  ||||   |  |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagtctctgagaagtatttgaattatgaga 18078877  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttca 419  Q
    | || |||||||||||||||||| |||||||| ||||||||    
T  18078876 acttttctttgttgactgatttctttgttaagaatccttca 18078836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 27458873 - 27458741
Alignment:
Q  5 agttacctcatcgccctttgcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatgaaagtaagatca 102  Q
    ||||| || ||| |||||| |||||||||| |||||| ||||||||   || ||||  |||||||||||||||||||| | |||||| |||||||| |||    
T  27458873 agttatcttatcacccttttcattttgaagtttaaccctcttctttgcaactttttgttcagtttctctaaatgatgatgctgtcataaaagtaagctca 27458774  T
Q  103 aatattgagcaacagtttcccaaggaagatgaa 135  Q
    ||||||||| | |||||||| || || ||||||    
T  27458773 aatattgagaatcagtttcctaacgatgatgaa 27458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 27458477 - 27458432
Alignment:
Q  374 tgagaaattgtctttgttgactgatttccttgttaagcatccttca 419  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  27458477 tgagaacttgtctttgttgactgatttccttgttaagcacccttca 27458432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 26138885 - 26138821
Alignment:
Q  354 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    |||||||||||||| | |  || ||| ||||||||||||||||||||| ||||||||||||||||    
T  26138885 tccaagaatcatttggattgtgggaatttgtctttgttgactgatttctttgttaagcatccttc 26138821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 26139185 - 26139089
Alignment:
Q  66 ttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 162  Q
    |||||||||||||||   | ||| ||||||||| |||||||||||| |||||||||| | ||| ||||| ||| ||||||| ||||| | |||||||    
T  26139185 ttctctaaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 418
Target Start/End: Complemental strand, 26204365 - 26204229
Alignment:
Q  279 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 378  Q
    |||| ||| |||||||||| ||   |||||||||||||||  ||| |||||| ||| ||||||||| | ||| | |||||||||||||| | |  ||  |    
T  26204365 tcagaggacccttctcaaaaagtacaagatttaagttctt--tgc-ttgtcaaaagtgagcttgagcaactaatctccaagaatcatttggattgtggaa 26204269  T
Q  379 aattgtctttgttgactgatttccttgttaagcatccttc 418  Q
    | || |||||||||||||||||| ||||||||||||||||    
T  26204268 atttttctttgttgactgatttctttgttaagcatccttc 26204229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  63 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 162  Q
    |||||||| ||||||||| | | ||| ||||||||| |||||||||||| |||| ||||| |||   ||||| ||| ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28479895 - 28479797
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 97  Q
    ||||| |||||||||| ||||||||||||||||| ||||   |||||| || |||||||| |||||||||| ||||||||||   |||||| |||||||    
T  28479895 cttaatttacctcatcaccctttgcattttgaagtttaattctcttctctcacaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaa 28479797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28509078 - 28508980
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 97  Q
    ||||| |||||||||| ||||||||||||||||| ||||   |||||| || |||||||| |||||||||| ||||||||||   |||||| |||||||    
T  28509078 cttaatttacctcatcaccctttgcattttgaagtttaattctcttctctcacaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaa 28508980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 26109974 - 26109937
Alignment:
Q  381 ttgtctttgttgactgatttccttgttaagcatccttc 418  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26109974 ttgtctttgttgactgatttctttgttaagcatccttc 26109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 26110303 - 26110202
Alignment:
Q  61 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 160  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||| | ||||| ||||| ||| ||||||||||||| | |||||    
T  26110303 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccct 26110204  T
Q  161 ct 162  Q
    ||    
T  26110203 ct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 26127383 - 26127278
Alignment:
Q  61 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 160  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26127383 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26127284  T
Q  161 cttcta 166  Q
    ||||||    
T  26127283 cttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 28187144 - 28187181
Alignment:
Q  381 ttgtctttgttgactgatttccttgttaagcatccttc 418  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28187144 ttgtctttgttgactgatttctttgttaagcatccttc 28187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 18077027 - 18076983
Alignment:
Q  144 ttccaaatcaagaccctcttctattgaatctcagtgtccttcaaa 188  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaaa 18076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 28136724 - 28136839
Alignment:
Q  303 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 402  Q
    |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||||| || ||| | ||||| | |||||    
T  28136724 gaagatttaagttcttctttgtttgtcaagagtgagcttgagcaactagtctccaagaatcatttggattatgagaacttatctctattgacaggtttcc 28136823  T
Q  403 ttgttaagcatccttc 418  Q
    |||||||  |||||||    
T  28136824 ttgttaaaaatccttc 28136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28186029 - 28186127
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 97  Q
    ||||||||| |||||| |||||| |||||||||| ||||   |||||| || ||||||||  |||||||||||||||||||| | ||| || |||||||    
T  28186029 cttaagttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatgatgatgctgttataaaagtaa 28186127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 26177433 - 26177328
Alignment:
Q  61 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 160  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||| ||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26177433 tcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26177334  T
Q  161 cttcta 166  Q
    ||||||    
T  26177333 cttcta 26177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 26204566 - 26204494
Alignment:
Q  90 gaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 162  Q
    |||||||||||||||||||||| || | ||| |||| || | ||| ||| ||||||||||||| | |||||||    
T  26204566 gaaagtaagatcaaatattgaggaaaattttaccaatgatggtgatataatagtttccaaatctaaaccctct 26204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 1850 - 2264
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttgaagttaaccttcttctttctcaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaaga 99  Q
    ||||||||||| |||| |||||| ||||||||||||   || ||| |||| ||| |||| | |||||| | |||||||||| | | |||||||||||||     
T  1850 cttaagttaccacatcacccttttcattttgaagtttgact-cttatttcccacattttgttcagtttttttaaatgatgatgctatcatgaaagtaagc 1948  T
Q  100 tcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaag 199  Q
    ||| |||||||| | || ||||  ||||| |||||||||||||||||||||||||  | || | |||||| ||||||||||||||||||| || ||||||    
T  1949 tcagatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctctgtactattgtatctcagtgtccttcaaagcctgctcaag 2048  T
Q  200 gtattttattgcatcannnnnnnna-aattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaag 298  Q
    |||||||||||| |||          |||||||||||| ||||| ||||||||||||  |||||| | | |||| |||     || || |||||||||||    
T  2049 gtattttattgcttcattttagttttaattaattttcttgtgctaaaatatgcataattattattacctatactttca-----ggtgacccttctcaaag 2143  T
Q  299 agatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgat 398  Q
    ||||||||||||||||| ||||||  ||||||||| ||||||   ||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||    
T  2144 agatgaagatttaagttattcttgggttgtcacaaaggagctacggaatctagtttccgagaattatttggctattgagaacttgtctttgttgactgat 2243  T
Q  399 ttccttgttaagcatccttca 419  Q
    ||||| |||||| ||||||||    
T  2244 ttcctagttaagaatccttca 2264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 530 - 621
Alignment:
Q  61 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatc 152  Q
    |||||| |||||||||| || | ||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| || ||||| ||||    
T  530 tcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatgaaataataatttcccaatc 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 19507 - 19622
Alignment:
Q  303 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 402  Q
    |||||||||||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  ||||||  ||||||||||||||||||||     
T  19507 gaagatttaagttcttcttcgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgagaacatgtctttgttgactgatttct 19606  T
Q  403 ttgttaagcatccttc 418  Q
    ||||||| ||||||||    
T  19607 ttgttaaacatccttc 19622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19187 - 19277
Alignment:
Q  1 cttaagttacctcatcgccctttgcattttg-aagttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcat 89  Q
    |||||||||||||||| |||||| ||||||| || |||||  |||||| || ||||||||  ||||||||||||||||| |||| ||||||    
T  19187 cttaagttacctcatcacccttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatgacgacgttgtcat 19277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University