View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16577_low_11 (Length: 429)

Name: NF16577_low_11
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16577_low_11
NF16577_low_11
[»] chr3 (8 HSPs)
chr3 (138-393)||(25361580-25361835)
chr3 (1-89)||(25361443-25361531)
chr3 (1-86)||(25349567-25349651)
chr3 (1-86)||(25356774-25356859)
chr3 (1-86)||(25352105-25352190)
chr3 (138-207)||(25356914-25356986)
chr3 (140-207)||(25349711-25349781)
chr3 (174-235)||(25352285-25352346)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 138 - 393
Target Start/End: Original strand, 25361580 - 25361835
Alignment:
Q  138 ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacaggat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25361580 ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacaggat 25361679  T
Q  238 ccgcagttgttggtacaagtttcatcgtagaaattggctcagcaaatgtgtttgtagctaaaatatctcgatccagaggctctacatcagcacgcacttc 337  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25361680 ccgtagttgttggtacaagtttcatcgtagaaattggctcagcaaatgtgtttgtagctaaaatatctcgatccagaggctctacatcagcacgcacttc 25361779  T
Q  338 ttgctctaattcttccgtcttcttagtagtactacgtgcatggagtcgattatttg 393  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  25361780 ttgctctaatccttccgtcttcttagaagtactgcgtgcatggagtcgattatttg 25361835  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25361443 - 25361531
Alignment:
Q  1 ttaatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtccttac 89  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  25361443 ttaatcacgattggactgcttgcatctctcccaggaccatcatatgatcttttgaaggtcaaggttctcaatctatcactagtccttac 25361531  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25349567 - 25349651
Alignment:
Q  1 ttaatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 86  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25349567 ttaatcacaattggactagttgcatctctcccag-accatcatatacttttttgaaggccaaggttctcaatctattactagtcct 25349651  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25356774 - 25356859
Alignment:
Q  1 ttaatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 86  Q
    |||||||  |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25356774 ttaatcaaaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctattactagtcct 25356859  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25352105 - 25352190
Alignment:
Q  1 ttaatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 86  Q
    |||||||| ||||| | |||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25352105 ttaatcacaattgggcaggttgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatctattactagtcct 25352190  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 25356914 - 25356986
Alignment:
Q  138 ctacaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga 207  Q
    |||||| |||||| |||| |||||||||||||| |||||| ||||||   || ||||||||||||||||||||    
T  25356914 ctacaacatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga 25356986  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 25349711 - 25349781
Alignment:
Q  140 acaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga 207  Q
    ||||||||||| | || |||||||||||||| |||||| ||||||   || ||||||||||||||||||||    
T  25349711 acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga 25349781  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 25352285 - 25352346
Alignment:
Q  174 tattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacagg 235  Q
    |||| |||||||| |||||||||||||||||||| |   || ||||||| ||||||||||||    
T  25352285 tattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacagg 25352346  T

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