View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_13 (Length: 402)
Name: NF16577_low_13
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 26595196 - 26595570
Alignment:
| Q |
1 |
atatcatcatatatagactataagaataggagaataattaattatccaaacattaatatcccatattcggcttttaattatatgagttttnnnnnnnnnn |
100 |
Q |
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| T |
26595196 |
atatcatcatatatagactataagaataggagaataattaattatccaaacattaatatcccatattcgacttttaattatatgagtttttatatatata |
26595295 |
T |
|
| Q |
101 |
nnnnnnnngcattggttcttgtccattaattctacttagatacgttgaacaaatttcttttctttttgagcatcacgaatgtaaaataatttgtcatata |
200 |
Q |
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| T |
26595296 |
--------gcattggttcttgtccattaattctacttacatacgttgaacaaatttcgtttctttttgagcatcacgaatgtaaaataattggtcatata |
26595387 |
T |
|
| Q |
201 |
tacccaagcatatttcttaactatgtattccatctgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaaggat |
300 |
Q |
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| T |
26595388 |
tacccaagcatatttcttaactatgtattccaactgaagacaaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaaggat |
26595487 |
T |
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| Q |
301 |
taagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgag |
383 |
Q |
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| T |
26595488 |
taagaatcattacaaatgtgccaattgccacattatcatcgaaaatatcatagaatttttgtgaacacacacaaagtcgtgag |
26595570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 26609002 - 26609082
Alignment:
| Q |
222 |
tatgtattccatctgaagacaaaagttt-atcctctttgattattggtgggtctattgtatttgggacagaaagaaggatt |
301 |
Q |
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|||||||||||||||||| ||||||| ||||| || ||||| ||||||||| | ||||| |||||| ||||||||||| |
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| T |
26609002 |
tatgtattccatctgaagggaaaagttggatcctgttcaattatcggtgggtctctagtattcgggacaaaaagaaggatt |
26609082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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