View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_15 (Length: 384)
Name: NF16577_low_15
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 40260605 - 40260954
Alignment:
| Q |
18 |
actctcaacctgtaactccaacgccatcaatcttcttctttgtctttcagattctaagtttgtttccaacttgatcaccttatcttgtatctcaggatcg |
117 |
Q |
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| T |
40260605 |
actctcaacctgtaactccaacgccatcaatcttcttctttgtctttcagattctaagtttgtttccaacttgatcaccttatcttgtatctcaggatcg |
40260704 |
T |
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| Q |
118 |
ttaacaccgttactagtagcaacagcaaaagtactagttgagcttgatcctaatcccatttcccaaacatccccagttgattgtaaatgtatagaggaaa |
217 |
Q |
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| T |
40260705 |
ttaacactgttactagtagcaacagcaaaagtactagttgagcttgatcctaatcccatttcccaaacatccccagttgattgtaaatgtatagaggaaa |
40260804 |
T |
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| Q |
218 |
atggattcctttcctgtataaatgaaaaatattactaccattgacatagcacctaaacttccatataaataaaagctgagaactacaactaaaagaatga |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40260805 |
atggattccattcctgtataaatgaaaaatattactaccattgacataacacctaaacttccatataaataaaagctgagaactacaactaaaagaatga |
40260904 |
T |
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| Q |
318 |
ttggttaaaagttgaacacataaagttacacaactcaatggtattagagc |
367 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40260905 |
ttggttaaaagttgaacacataaaattacacaactcaatggtattagagc |
40260954 |
T |
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