View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16577_low_16 (Length: 382)
Name: NF16577_low_16
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 9108330 - 9107987
Alignment:
| Q |
17 |
ttatgggtactttattgtatatgcagatatcatattgactactacctaaaactctccaaagttctcctnnnnnnnntctactacactcacctcttacgga |
116 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
9108330 |
ttatggttacgttattgtatattcagatatcatattgactactacctaaaactc----cacttct--aaaaaaaaatctactacactcacctcttacgga |
9108237 |
T |
|
| Q |
117 |
ttgaaattaatgtggatatcatattttaagtgtctgcttcataaaattgtattaaacacaccaaacacaaannnnnnnccaacga-aagaatgagtgttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
9108236 |
ttgaaattaatgtggatatcatattttaagtgtctgcttcataaaattgtattaaacacaccaaacacaaatttttttccaacgacaagaatgagtgttg |
9108137 |
T |
|
| Q |
216 |
gaaagagtattaaaaagagtgttttctaacactcatcatattcttaattgttttctctttgaagaattcaaccgcaataagaccccacgtttatatttta |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108136 |
gaaagagtattaaaaagagtg-tttctaacactcatcatattcttaattgttttctctttgaagaattcaaccgcaataagaccccacgtttatatttta |
9108038 |
T |
|
| Q |
316 |
aaatttgacttgaactcttcctactctttgaagaatttccctttgatactt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9108037 |
aaatttgacttgaactcttcctactctttgaagaacttccctttgatactt |
9107987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 9018780 - 9018686
Alignment:
| Q |
259 |
ttaattgttttctctttgaagaattcaaccgcaataagaccccacgtttatattttaaaatttgacttgaactcttcctactctttgaagaattt |
353 |
Q |
| |
|
||||||| ||| ||||||| |||||||||| | ||||| | || |||||| |||||||| |||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
9018780 |
ttaattgctttttctttgatgaattcaaccaccataaggacacatgtttatgttttaaaaattgacttggactcttcttactctttgaataattt |
9018686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University