View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_2 (Length: 833)
Name: NF16577_low_2
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 7 - 816
Target Start/End: Complemental strand, 6246077 - 6245263
Alignment:
| Q |
7 |
gtgagatgaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaagttattattga |
106 |
Q |
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| T |
6246077 |
gtgagaagaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaagttattattga |
6245978 |
T |
|
| Q |
107 |
ttaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaattattgttggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6245977 |
ttaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaattattgttggt |
6245878 |
T |
|
| Q |
207 |
ccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgagtaagcaagtatgtaatatgtaacttgtagttgttgctaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6245877 |
ccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgaataagcaagtatgtaatatgtaacttgtagttgttgctaaa |
6245778 |
T |
|
| Q |
307 |
ctcgatttaatctatcaaccnnnnnnnnnnnnntctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcattttatttatg |
406 |
Q |
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| T |
6245777 |
ctcgatttaatctatcaaccaaaaaaaaaaa--tctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcattttatttatg |
6245680 |
T |
|
| Q |
407 |
tgcacgttttatagtgggtaaagtttgtaaatgattatattttattatacaccaagacattcatgttctctttttaatat------gttttctatatatt |
500 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6245679 |
tgcacgttttatagtgggtatagtttgtaaatgattatattttattatacaccaagacattcatgttctctttttaatatttatatgttttctatatatt |
6245580 |
T |
|
| Q |
501 |
att-ggacgaaattttaagttgactatttcttcatgtttaggaaattaatgattgagaaggtggaaaactgagcagttgagagaaccatttctcttttca |
599 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6245579 |
atttggacgaaattttaagttgactatttcttcatgtttaggaaattaatgattgagaaggtggaaaactgagcagttgagagaaccatttctcttttca |
6245480 |
T |
|
| Q |
600 |
tttcatggtatttataaactgaatgaattgaatttacataataatgtacagtttatcgtttatatagatactctcatagatcacttagaaaaagattaaa |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6245479 |
tttcatggtatttataaactgaatgaattgaatttacataataatgtacagtttatcgtttatatagatactctcatagatcacttagaaaaagattata |
6245380 |
T |
|
| Q |
700 |
gaaaacccaatttataactataacaacagatttgtgacctacttgctaacaagtctaaccgattcggataactaatcaaactaatcagtaacaaatcttc |
799 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6245379 |
gaaaacccaatttataactataacaacagatttgtgacctacttgctaacaagtctaaccgattcatataactaatcaaactaatcagtaacaaatcttc |
6245280 |
T |
|
| Q |
800 |
taatcgaagagcgtgtt |
816 |
Q |
| |
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||||||||||||||||| |
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| T |
6245279 |
taatcgaagagcgtgtt |
6245263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 662 - 748
Target Start/End: Original strand, 40680334 - 40680421
Alignment:
| Q |
662 |
tatagatactctcatagatcacttagaaaaag-attaaagaaaacccaatttataactataacaacagatttgtgacctacttgctaa |
748 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||| |||||| |||||| |
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| T |
40680334 |
tatagatactctccaagatcacttagaaaaaggattaaagaaaacccaatttgtaactataacaacaaacttgtaacctacatgctaa |
40680421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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