View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_20 (Length: 373)
Name: NF16577_low_20
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 102 - 367
Target Start/End: Complemental strand, 42021932 - 42021669
Alignment:
| Q |
102 |
taagtcaaatgatgtgattgttaggtttgcatttaaaaataatgggttttcaggtagattgttaggtatccattagacattccctcaaacctaggtttgc |
201 |
Q |
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| T |
42021932 |
taagtcaaatgatgtgattgttaggtttgcatttaaaaataatgggttttcaggtagattgttaggtatccattagacattccctcaaacct-ggtttgc |
42021834 |
T |
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| Q |
202 |
atttaaaaagaaaacaatattttggcatttagacttgtgaatgtannnnnnnnnnnnaaacaatgaaaatgacaaaagattgttttcattatttccnnnn |
301 |
Q |
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| T |
42021833 |
atttaaaaagaaaacaatattttggcatttagatttgtgaatgta-tttttttttttaaacaatgaaaatgacaaaagattgttttcattatttccaaaa |
42021735 |
T |
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| Q |
302 |
nnntgtcatcttcaagcaacatttcatcttctctctatcacaatgactcaaaagtcccacgtcttc |
367 |
Q |
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| T |
42021734 |
aaatgtcatcttcaaacaacatttcatcttctctctatcacaatggtttaaaagtcccacgtcttc |
42021669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 15677691 - 15677655
Alignment:
| Q |
259 |
aaacaatgaaaatgacaaaagattgttttcattattt |
295 |
Q |
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| T |
15677691 |
aaacaatgaaaatgccaaaaaattgttttcattattt |
15677655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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