View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_21 (Length: 331)
Name: NF16577_low_21
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_21 |
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| [»] chr3 (9 HSPs) |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 27633856 - 27634186
Alignment:
| Q |
1 |
atatatcatacagaacatagtaatcacacacatacataaatattattaaaatcaaatatacaaaacaacctttctcatccaccgaaatactgtgatcgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27633856 |
atatatcatacagaacatagtaatcacacacattcataaatattattaaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtc |
27633955 |
T |
|
| Q |
101 |
agcctcattcatcatgcgaatatcgaaaacaggaatttcttgtaacacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcag |
200 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27633956 |
aacctcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagtaggtgttgttgaagatgaagctccaatgttgttttcctctgtgcag |
27634055 |
T |
|
| Q |
201 |
ttcgtcattgtcactcactcaacaatcactctctcacgcaaccttttcttgtaaaagactgaaaagcttatttgatttgatgggttacgagggaggtagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27634056 |
ttcgtcattgtcactcactcaacaatcactctctcacgcaaccttttcttgtaaaagactgaaaagcttatttgatttgatgggttacgagggaggtagc |
27634155 |
T |
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| Q |
301 |
tacttacattgtgtttgtataatatgtataa |
331 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
27634156 |
tacttatattgtgtttgtataatatgtataa |
27634186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 34518674 - 34519002
Alignment:
| Q |
1 |
atatatcatacagaacatagtaatcacacacatacataaatattattaaaatcaaatatacaaaacaacctttctcatccaccgaaatactgtgatcgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34518674 |
atatatcatacagaacatagtaatcacacacatgcataaatattattaaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtc |
34518773 |
T |
|
| Q |
101 |
agcctcattcatcatgcgaatatcgaaaacaggaatttcttgtaacacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcag |
200 |
Q |
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| | | |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
34518774 |
aactttattcatcatgcgaatatcaaaaacaggaatatcttgtgacacctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgcag |
34518873 |
T |
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| Q |
201 |
ttcgtcattgtcactcactcaacaatcactctctcacgcaaccttttcttgtaaaagactgaaaagcttatttgatttgatgggttacgagggaggtagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34518874 |
ttcgtcattgtcactcactcaacaatcactctctcatgcaaccttttcttctaaaagactgaaaagcttatttgatttgatgggttacgagggaggtagc |
34518973 |
T |
|
| Q |
301 |
tacttacattgtgtttgtataatatgtat |
329 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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| T |
34518974 |
tacttatattgtgtttgtataatatgtat |
34519002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 34371169 - 34371084
Alignment:
| Q |
146 |
cacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactc |
231 |
Q |
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|
||||||||| |||| |||||| |||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34371169 |
cacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactcactcaacaatcactc |
34371084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 34527920 - 34528006
Alignment:
| Q |
146 |
cacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactctctc |
235 |
Q |
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|||||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |
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| T |
34527920 |
cacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcctctgtgcaattcgtcattgtcactcactcgacaatctctctctc |
34528006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 34489955 - 34490005
Alignment:
| Q |
194 |
tgtgcagttcgtcattgtcactcactcaacaatcactctctcacgcaacct |
244 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34489955 |
tgtgcaattcgtcattgtcactcactcaacaatcactctctcacgcaacct |
34490005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 34527707 - 34527799
Alignment:
| Q |
24 |
tcacacacatacataaatattattaaaatcaaat-atacaaaacaacctttctcatccaccgaaatactgtgatcgtcagcctcattcatcat |
115 |
Q |
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||||||||||| | ||| |||||||||||||||| | | |||||||||||||||||| | |||||||||||||| ||| |||||||| |||| |
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| T |
34527707 |
tcacacacataaagaaagattattaaaatcaaattaaaaaaaacaacctttctcatctccagaaatactgtgatcatcaacctcattcgtcat |
34527799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 27630788 - 27630848
Alignment:
| Q |
184 |
tgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactctctcacgcaacct |
244 |
Q |
| |
|
||||||| | |||||| ||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
27630788 |
tgttttcttatgtgcaattcttcattgtcactcactcaacaatcactctggcacgcaacct |
27630848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 34473116 - 34473165
Alignment:
| Q |
186 |
ttttcctctgtgcagttcgtcattgtcactcactc-aacaatcactctct |
234 |
Q |
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|
||||||| |||||| ||||||||||||||||| || |||||||||||||| |
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| T |
34473116 |
ttttcctatgtgcaattcgtcattgtcactcagtcaaacaatcactctct |
34473165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 34523419 - 34523467
Alignment:
| Q |
195 |
gtgcagttcgtcattgtcactcactcaacaatcactctctcacgcaacct |
244 |
Q |
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||||| |||| ||||||||||||| |||||||||||| |||||||||||| |
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| T |
34523419 |
gtgcaattcgccattgtcactcacacaacaatcactc-ctcacgcaacct |
34523467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 24486485 - 24486401
Alignment:
| Q |
149 |
ctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactctc |
233 |
Q |
| |
|
||||||||||||||||||||| |||| | | ||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
24486485 |
ctcagtaggtgttgttgaagacaaagcgctcacgttgttttcctctatgcagttcttcattgtcactcgctcaacaatcactctc |
24486401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 24472524 - 24472440
Alignment:
| Q |
149 |
ctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactctc |
233 |
Q |
| |
|
||||||||||||||||||||| |||| | | |||||||||||||||||| ||| ||||||||| || | |||||||||||||| |
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|
| T |
24472524 |
ctcagtaggtgttgttgaagacaaagcgctcacgttgttttcctctgtgcaattcatcattgtcagtcgcacaacaatcactctc |
24472440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 24468217 - 24468133
Alignment:
| Q |
149 |
ctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactctc |
233 |
Q |
| |
|
||||||| |||||||| |||||||||| | |||||||||||||||| ||||| ||||| | |||| |||||||||||||||| |
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| T |
24468217 |
ctcagtaagtgttgtttaagatgaagcgctctcgttgttttcctctgtgtagttcttcattttaactcgctcaacaatcactctc |
24468133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 2109 - 2180
Alignment:
| Q |
146 |
cacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactca |
217 |
Q |
| |
|
||||||||||||||||| || |||||||| | |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2109 |
cacctcagtaggtgttggtggagatgaagagctcatgttgttttcctctgtgtagttcgtcattgtcactca |
2180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 10528021 - 10528092
Alignment:
| Q |
146 |
cacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactca |
217 |
Q |
| |
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||||||||||||||||| || |||||||| | |||||||||||||||||| ||||||||||||||||||| |
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| T |
10528021 |
cacctcagtaggtgttgctggagatgaagtgcgcatgttgttttcctctgtgtagttcgtcattgtcactca |
10528092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 10534921 - 10534992
Alignment:
| Q |
146 |
cacctcagtaggtgttgttgaagatgaagcaccaatgttgttttcctctgtgcagttcgtcattgtcactca |
217 |
Q |
| |
|
||||||||||||||||| || |||||||| | |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
10534921 |
cacctcagtaggtgttggtggagatgaagagctcatgttgttttcctctgtgtagttcgtcattgtcactca |
10534992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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