View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_33 (Length: 237)
Name: NF16577_low_33
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_33 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 15886063 - 15885844
Alignment:
| Q |
17 |
aatatcaccattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggagagaggggtctccttgccttaaccctc |
116 |
Q |
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| T |
15886063 |
aatatcaccattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggagagaggggtctccttgccttaaccctc |
15885964 |
T |
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| Q |
117 |
taccagaaataaaaggaacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatccatttgttctattgatgagagaa |
216 |
Q |
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| T |
15885963 |
taccaggaataaaaggtacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatcca-ttgttctattgatgagaaaa |
15885865 |
T |
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| Q |
217 |
actcatttccatcataacccc |
237 |
Q |
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| T |
15885864 |
actcatttccatcataacccc |
15885844 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 8942357 - 8942306
Alignment:
| Q |
173 |
gtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
224 |
Q |
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| T |
8942357 |
gtttctacacacatcatgatccacttgatctattgatgagataaactcattt |
8942306 |
T |
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