View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_34 (Length: 235)
Name: NF16577_low_34
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_34 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 84559 - 84336
Alignment:
| Q |
12 |
atgaaggaggagatggagtgtcacagtagttatatccataccatgtgtcactagggatggacgagttgaaagtaaacgtaacagcatctgaattgtatcc |
111 |
Q |
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| T |
84559 |
atgaaggaggagatggagtgtcacagtagttatatccataccatgtgtcactagggatggacgagttgaaagtaaacgtaacagcatctgaattgtatcc |
84460 |
T |
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| Q |
112 |
gtagattttcacactttctggttcccaacccttgttatctgttgaacctgatctatatagataggcataacaaattgaagatgcacatggaccgtctatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||| | |
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| T |
84459 |
gtagattttcacactttctggttcccaacccttgttatccgttgaacctgatctatatagataggcaaaacaaattggagatgcacatggtccatctagt |
84360 |
T |
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| Q |
212 |
tgaaatgaatctgatgaacattgc |
235 |
Q |
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|||||||| ||||||||||||||| |
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| T |
84359 |
tgaaatgagtctgatgaacattgc |
84336 |
T |
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