View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_35 (Length: 233)
Name: NF16577_low_35
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 55331187 - 55331405
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataagaagtatacttgtagctgcagaaaataaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55331187 |
tttgaataatcttgtagcgtttctttgttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaagt |
55331286 |
T |
|
| Q |
101 |
gtggatgatagtttaagagccaaaagtggggtgccaatagcaccacttgcggccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55331287 |
gtggatgatagtttaagagccaaaagtggggtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgt |
55331386 |
T |
|
| Q |
201 |
tgtttagaagtaggttgtt |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
55331387 |
tgtttagaagtaggttgtt |
55331405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 55336625 - 55336843
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataagaagtatacttgtagctgcagaaaataaaagt |
100 |
Q |
| |
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|||||| ||||||||||| || | |||||||| ||||| |||||||||||||| |||||||||||||| | |||| || ||||| ||||| | ||| |
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| T |
55336625 |
tttgaacaatcttgtagcattgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaaga |
55336724 |
T |
|
| Q |
101 |
gtggatgatagtttaagagccaaaagtggggtgccaatagcaccacttgcggccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgt |
200 |
Q |
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| T |
55336725 |
gtggatgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgt |
55336824 |
T |
|
| Q |
201 |
tgtttagaagtaggttgtt |
219 |
Q |
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||||||||||||||||||| |
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| T |
55336825 |
tgtttagaagtaggttgtt |
55336843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8406251 - 8406319
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataag |
69 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| | |||||| || || || ||||||||||||||||| |
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| T |
8406251 |
tttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataag |
8406319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 8375634 - 8375567
Alignment:
| Q |
2 |
ttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataag |
69 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || | ||| ||||| || ||||||||||||||||| |
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| T |
8375634 |
ttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggattttgttcatgataag |
8375567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8395321 - 8395254
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| | |||||| || || || |||||||||||||||| |
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| T |
8395321 |
tttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8395254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 8439469 - 8439536
Alignment:
| Q |
2 |
ttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataag |
69 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || | ||| ||||| || ||||||||||||||||| |
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| T |
8439469 |
ttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggattttgttcatgataag |
8439536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 8412372 - 8412438
Alignment:
| Q |
2 |
ttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | |||||| || || || |||||||||||||||| |
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| T |
8412372 |
ttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8412438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 8434470 - 8434536
Alignment:
| Q |
2 |
ttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | |||||| || || || |||||||||||||||| |
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| T |
8434470 |
ttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8434536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8368637 - 8368704
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||| || ||||| ||||| || |||||||||||||||| |
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| T |
8368637 |
tttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
8368704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8400773 - 8400706
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||| || ||||| ||||| || |||||||||||||||| |
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|
| T |
8400773 |
tttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
8400706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8422350 - 8422283
Alignment:
| Q |
1 |
tttgaataatcttgtagcgtttctttgttcctccgcgagttgcgaaggctgaattttgttcatgataa |
68 |
Q |
| |
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|||||| |||||||| || |||||||| ||||| || ||||| ||||| || |||||||||||||||| |
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| T |
8422350 |
tttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
8422283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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