View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16577_low_37 (Length: 228)

Name: NF16577_low_37
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16577_low_37
NF16577_low_37
[»] chr3 (6 HSPs)
chr3 (1-209)||(20047288-20047496)
chr3 (30-206)||(20014625-20014798)
chr3 (161-210)||(19983262-19983311)
chr3 (127-174)||(19983197-19983244)
chr3 (113-210)||(19952815-19952910)
chr3 (158-210)||(20006703-20006755)
[»] chr7 (3 HSPs)
chr7 (63-176)||(12578733-12578846)
chr7 (1-176)||(12494634-12494807)
chr7 (6-176)||(12518443-12518609)
[»] chr5 (1 HSPs)
chr5 (43-210)||(26353346-26353511)
[»] chr1 (2 HSPs)
chr1 (66-210)||(1718687-1718830)
chr1 (94-199)||(25999538-25999642)
[»] chr8 (1 HSPs)
chr8 (156-192)||(22651737-22651773)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 20047288 - 20047496
Alignment:
Q  1 agttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20047288 agttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacag 20047387  T
Q  101 tgattctctttacatactctctattttgttgataacaaatgaaggataaattttaagactagttttgatgagttatgctatatgtttttattaactgata 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  20047388 tgattctcttttcatactctctattttgttgataacaaatgaaggataaattttaagattagttttgatgagttatgctatatatttttattaactgata 20047487  T
Q  201 tgattgtgt 209  Q
    |||||||||    
T  20047488 tgattgtgt 20047496  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 20014798 - 20014625
Alignment:
Q  30 aatcaacagccaccatcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtgattctctttacatactctctattttgt 129  Q
    |||||||  ||||||||||| ||||||||  || | ||||||||||||| ||||| | |||||  | || ||||  || ||| ||||||||| |||||||    
T  20014798 aatcaaccaccaccatcttcttcttaaaatttt-tgttgtttttgaattctgttcctgaaactcgttacggtgacacttttttcatactctccattttgt 20014700  T
Q  130 tgataacaaatgaaggataaattttaagactagttttgatgagttatgctatatgtttttattaactgatatgattg 206  Q
    |||||| |||||||||   || |  || ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  20014699 tgataagaaatgaaggcggaagt--aatactagctttgatgagttatgatatatgtttttattaactgatatgattg 20014625  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 19983262 - 19983311
Alignment:
Q  161 agttttgatgagttatgctatatgtttttattaactgatatgattgtgtt 210  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  19983262 agttttgatgagttatggtatatatttttattaactgatatgattatgtt 19983311  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 19983197 - 19983244
Alignment:
Q  127 tgttgataacaaatgaaggataaattttaagactagttttgatgagtt 174  Q
    |||||||||||||||||||||||||| | | | |||||||||||||||    
T  19983197 tgttgataacaaatgaaggataaattcttatattagttttgatgagtt 19983244  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 19952815 - 19952910
Alignment:
Q  113 catactctctattttgttgataacaaatgaaggataaattttaagactagttttgatgagttatgctatatgtttttattaactgatatgattgtgtt 210  Q
    ||||| ||||| |||||||||||||||||||||| |||  ||||  |||||||| |||||  ||| | ||||||||||||  ||| |||| |||||||    
T  19952815 cataccctctaatttgttgataacaaatgaaggagaaa--ttaatgctagtttttatgagagatgatttatgtttttattttctgctatgcttgtgtt 19952910  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20006755 - 20006703
Alignment:
Q  158 actagttttgatgagttatgctatatgtttttattaactgatatgattgtgtt 210  Q
    |||||||| ||| ||||||| ||||||||||||||| ||| |||| |||||||    
T  20006755 actagtttagataagttatgatatatgtttttattatctgctatgcttgtgtt 20006703  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 12578846 - 12578733
Alignment:
Q  63 atcttgtttttgaattttgttcatcaaacttatgacagtgattctctttacatactctctattttgttgataacaaatgaaggataaattttaagactag 162  Q
    |||||||||||||||| | |||| |  |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||     
T  12578846 atcttgtttttgaattctcttcagcctacttatgacaatgattctctttccatactctctactttgttgataataaatgaaggataaattgtaagactat 12578747  T
Q  163 ttttgatgagttat 176  Q
    ||||||||||||||    
T  12578746 ttttgatgagttat 12578733  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12494807 - 12494634
Alignment:
Q  1 agttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatctt---aaaaagttatcttgtttttgaattttgttcatcaaacttatga 97  Q
    |||| |||| |||||||| || || ||| |||||||| | ||||||||||||||   || || | |||||||||||||||| | ||||||  ||||||||    
T  12494807 agtttaggctacgcctcattgttcaaaggaatcaacaacgaccatcttcatcttcttaataaatgatcttgtttttgaattctcttcatcctacttatga 12494708  T
Q  98 cagtgattctctttacatactctctattttgttgataacaaatgaaggataaattttaagactagttttgatgagttat 176  Q
    || ||||||||||| |||||||||||||||||||||||||||     |||||||| |||||||| ||||||||||||||    
T  12494707 caatgattctctttccatactctctattttgttgataacaaa-----gataaattgtaagactatttttgatgagttat 12494634  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 12518609 - 12518443
Alignment:
Q  6 aggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatctt---aaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtg 102  Q
    |||| |||||||| || || ||| |||||||| | ||||||||||||||   || || | |||||||||||||||| | ||||||  |||||||||| ||    
T  12518609 aggctacgcctcattgttcaaaggaatcaacaacgaccatcttcatcttcttaataaatgatcttgtttttgaattctcttcatcctacttatgacaatg 12518510  T
Q  103 attctctttacatactctctattttgttgataacaaatgaaggataaattttaagactagttttgatgagttat 176  Q
    ||||  ||| ||||  |||||||||||||||||||||     |||||||| |||||||| ||||||||||||||    
T  12518509 attcggtttccata--ctctattttgttgataacaaa-----gataaattgtaagactatttttgatgagttat 12518443  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 26353511 - 26353346
Alignment:
Q  43 catcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtgattctctttacatactctctattttgttgataacaaatga 142  Q
    ||||||| ||||||||  |||| |||||||||||||   ||||| ||||| | ||||||||| |||||| ||||||||  ||| |||||| ||||| |||    
T  26353511 catcttcttcttaaaactttattttgtttttgaattcccttcatgaaactcacgacagtgatgctcttttcatactcttgattgtgttgaaaacaattga 26353412  T
Q  143 aggataaattttaagactagttttgatgagttatgctatatgtttttattaactgatatgattgtgtt 210  Q
    ||||  ||   ||| ||||||||| ||||||||  |||||| |||||||||||||||||| |||||||    
T  26353411 aggaataa--gtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgtt 26353346  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 1718687 - 1718830
Alignment:
Q  66 ttgtttttgaattttgttcatcaaacttatgacagtgattctctttacatactctctattttgttgataacaaatgaaggataaattttaagactagttt 165  Q
    |||||||||| |||| || || ||||| |||||| |||| ||||||  |||||||  |||||||||||||||||||||||| |||   ||| | ||||||    
T  1718687 ttgtttttgacttttctttatgaaactcatgacattgatgctctttt-atactcttcattttgttgataacaaatgaaggagaaa--gtaatattagttt 1718783  T
Q  166 tgatgagttatg--ctatatgtttttattaactgatatgattgtgtt 210  Q
    | ||||||||||   ||||  |||||||||||||||||| |||||||    
T  1718784 taatgagttatgatgtataaatttttattaactgatatgcttgtgtt 1718830  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 25999642 - 25999538
Alignment:
Q  94 atgacagtgattctc-tttacatactctctattttgttgataacaaatgaaggataaattttaagactagttttgatgagttatgctatatgtttttatt 192  Q
    ||||||||||| ||| ||| |||| || |||||||||||||||||||||||||| |||  |||| |||||||| | | | ||||| | ||||||||||||    
T  25999642 atgacagtgatgctcgttttcatattccctattttgttgataacaaatgaaggagaaa--ttaatactagtttaggtaatttatgatgtatgtttttatt 25999545  T
Q  193 aactgat 199  Q
    | |||||    
T  25999544 atctgat 25999538  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 22651773 - 22651737
Alignment:
Q  156 agactagttttgatgagttatgctatatgtttttatt 192  Q
    |||||||||||||||||||||| |||||||| |||||    
T  22651773 agactagttttgatgagttatgatatatgttattatt 22651737  T

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