View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16577_low_4 (Length: 521)
Name: NF16577_low_4
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 503
Target Start/End: Complemental strand, 41875270 - 41874776
Alignment:
| Q |
10 |
attattcttctctattattgttgctgttcggaaagtcattgaaccttttgtgtataaatagctagctagtggatggagcacaagacatccattgcaaaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875270 |
attattcttctctattattgttgctgttcggaaagtcattgaaccttttgtgtataaatagctagctagtggatggagcacaagacatccattgcaaaca |
41875171 |
T |
|
| Q |
110 |
tcgttctccaatcaaattaacaagaaaagnnnnnnn-gaaagattcattcttaatgggaagcaccaaaagtgaattgtactttgtctttctgatctatga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875170 |
tcgttctccaatcaaattaacaagaaaagaaaaaaaagaaagattcattcttaatgggaagcaccaaaagtgaattgtactttgtctttctgatctatga |
41875071 |
T |
|
| Q |
209 |
tcaagaatacgagcgacttcgaactaatcggtatgtcttcatcatgtctttgttttattatttgtaacaatatgcgattaattaacattacttttaaaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875070 |
tcaagaatacgagcgacttcgaactaatcggtatgtcttcatcatgtctttgttttattatttgtaacaatatgcgattaattaacattacttttaaaca |
41874971 |
T |
|
| Q |
309 |
tttatgttgtgctaaattttttaattagaaccaagagtggggcaaataagcttgatttgtaccttagtagaaagcatgatgagcttttagcaagcactct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41874970 |
tttatgttgtgctaaattttttaattagaaccaagagtggggcaaataagcttgatttgtaccttagtagaaagcatgatgagcttttagcaagcactct |
41874871 |
T |
|
| Q |
409 |
agacccaggaagctacaagaagatatcttcttttgctattgttgatggttttacagtggaaatcaccgaggatcaagtaatgtgtaatttgtcct |
503 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41874870 |
agagccaggaagctacaagaagatatcttcttttgctattgttgatggttttacagtggaaatcaccgaggatcaagtaatgtgtaatttgtcct |
41874776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University