View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_6 (Length: 514)
Name: NF16577_low_6
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 30478627 - 30479013
Alignment:
| Q |
10 |
agtgagatgaacttatataattaagaggagagtttaaggaacttggatacaaaattctt-gtggaggcagatatttaaagcgtaaaatcctcctcagata |
108 |
Q |
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| T |
30478627 |
agtgaaatcaacttatataattaagaggagagtttaaggaacttgaataccaaattctttgtggaggcagataattaaagcgtaaaatcctcctcagata |
30478726 |
T |
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| Q |
109 |
agcttaattcagatattaaaagagataaaattgtgaatagtactttaagaaaatggtggtagtactttagttacggtgtatttcagatcatta----att |
204 |
Q |
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| T |
30478727 |
agcttaattcagatattaaaagagataaaattgtgaatagtactttaagaaaatggtggtagtactttagttacggtgtatttcagatcattaattaatt |
30478826 |
T |
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| Q |
205 |
aattaatta---cattacatgcatgctgattaatgaactactccaacgagaaaaacgtcggattactgtcaatgaggtctcgttgcttgacatcttggag |
301 |
Q |
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| T |
30478827 |
aattaattaattaattacatgcatgctgattaatgaactactccaacgagaaaaacgtcggattactgccaatgaggtctcgttgcttgacatcttggag |
30478926 |
T |
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| Q |
302 |
acaggatccttttttatagatattgttaatgaacgtcattaagaaaaggtaac-aaaatgattattattttcaaaatattaacaaaa |
387 |
Q |
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| T |
30478927 |
acaggatccttttttatagatattgttaatgaacgtcattaagaaaaggtaacaaaaatgactattattttcaaaatattaacaaaa |
30479013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 421 - 514
Target Start/End: Original strand, 30479062 - 30479155
Alignment:
| Q |
421 |
ttttaaatattaacacatnnnnnnnnttgacagaaaaagttaaatagataatgttcttggtaaaaagggaatcctttatattcaaaaaagtata |
514 |
Q |
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| T |
30479062 |
ttttaaatattaacacataaaaaaaattgacagaaaaagttacatagataatgttcttggtaaaaagggaatcctttatattcaaaaaagtata |
30479155 |
T |
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