View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16577_low_7 (Length: 511)

Name: NF16577_low_7
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16577_low_7
NF16577_low_7
[»] chr8 (14 HSPs)
chr8 (18-505)||(10683039-10683526)
chr8 (345-453)||(44912966-44913074)
chr8 (345-483)||(43811260-43811398)
chr8 (345-483)||(201461-201599)
chr8 (345-483)||(316298-316436)
chr8 (345-483)||(30409580-30409718)
chr8 (396-483)||(28647153-28647240)
chr8 (345-483)||(1287569-1287707)
chr8 (396-483)||(41946058-41946145)
chr8 (55-170)||(1288364-1288479)
chr8 (56-170)||(200687-200801)
chr8 (56-170)||(315524-315638)
chr8 (56-170)||(30408806-30408920)
chr8 (56-170)||(43810486-43810600)
[»] chr5 (13 HSPs)
chr5 (264-469)||(16598070-16598275)
chr5 (345-483)||(12019531-12019669)
chr5 (345-483)||(37659469-37659607)
chr5 (396-483)||(10275279-10275366)
chr5 (345-483)||(7103151-7103289)
chr5 (345-483)||(16794911-16795049)
chr5 (264-481)||(30048062-30048276)
chr5 (345-448)||(40371024-40371127)
chr5 (24-178)||(30048864-30049018)
chr5 (345-483)||(30696038-30696176)
chr5 (55-168)||(40370249-40370362)
chr5 (56-170)||(7102377-7102491)
chr5 (56-170)||(16795709-16795823)
[»] chr3 (7 HSPs)
chr3 (345-483)||(43548457-43548595)
chr3 (345-463)||(22931084-22931202)
chr3 (345-483)||(54171121-54171259)
chr3 (396-483)||(21847870-21847957)
chr3 (345-483)||(756564-756702)
chr3 (345-483)||(9698323-9698461)
chr3 (56-170)||(54170347-54170461)
[»] scaffold0027 (1 HSPs)
scaffold0027 (244-477)||(54093-54325)
[»] scaffold0044 (2 HSPs)
scaffold0044 (345-483)||(48642-48780)
scaffold0044 (56-170)||(47868-47982)
[»] chr7 (3 HSPs)
chr7 (345-483)||(7943860-7943998)
chr7 (240-480)||(730353-730593)
chr7 (345-483)||(27757639-27757777)
[»] chr6 (7 HSPs)
chr6 (345-483)||(8319281-8319419)
chr6 (391-483)||(17160335-17160427)
chr6 (345-483)||(17881256-17881394)
chr6 (399-483)||(27571563-27571647)
chr6 (56-170)||(8318507-8318621)
chr6 (55-168)||(17889632-17889745)
chr6 (55-168)||(27570734-27570847)
[»] chr4 (6 HSPs)
chr4 (345-483)||(44147800-44147938)
chr4 (218-481)||(20290246-20290509)
chr4 (398-483)||(31355421-31355506)
chr4 (396-483)||(43683007-43683094)
chr4 (345-483)||(27186881-27187019)
chr4 (56-170)||(44148598-44148712)
[»] chr2 (6 HSPs)
chr2 (345-483)||(8051634-8051772)
chr2 (345-483)||(36671293-36671431)
chr2 (398-483)||(13270358-13270443)
chr2 (396-465)||(35953920-35953989)
chr2 (56-170)||(8052432-8052546)
chr2 (56-170)||(36672091-36672205)
[»] chr1 (5 HSPs)
chr1 (345-483)||(39794637-39794775)
chr1 (345-483)||(26312255-26312393)
chr1 (218-281)||(36617812-36617875)
chr1 (56-170)||(26313053-26313167)
chr1 (56-170)||(39795435-39795549)
[»] scaffold0009 (1 HSPs)
scaffold0009 (370-483)||(64579-64692)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 10683039 - 10683526
Alignment:
Q  18 taaacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683039 taaacatcattattattgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagt 10683138  T
Q  118 tatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaaccagggttctaagatctacatgtttcacttttctgagagctttgcagctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683139 tatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaaccagggttctaagatctacatgtttcacttttctgagagctttgcagctt 10683238  T
Q  218 ttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgt 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683239 ttcaatattcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgt 10683338  T
Q  318 taatctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatca 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10683339 taatctgaaattgtttaactgcatgtcttcatctgattgaaaatattaatcagtttggatatgtaatcaacaatttttttatcatcttccatctgcatca 10683438  T
Q  418 gttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatactcttctagtatatcctatgcttc 505  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||    
T  10683439 gtttaaatttccttcttagagactgaagcttgatctgcttcaccttttcatcaccttcacgatactcttctagtatatcccatgcttc 10683526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 44912966 - 44913074
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || |||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||||| || ||||||| ||||||||    
T  44912966 ttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagactgaa 44913065  T
Q  445 gcttgatct 453  Q
    |||| ||||    
T  44913066 gctttatct 44913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 43811260 - 43811398
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  43811260 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 43811359  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  43811360 gcttaatcaacttcactttatcatcaccttcatgatact 43811398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 201461 - 201599
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  201461 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 201560  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  201561 gcttaatcaacttcactttatcatcaccttcatgatact 201599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 316298 - 316436
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  316298 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 316397  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  316398 gcttaatcaacttcactttatcatcaccttcatgatact 316436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 30409580 - 30409718
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  30409580 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 30409679  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  30409680 gcttaatcaacttcactttatcatcaccttcatgatact 30409718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 28647240 - 28647153
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||||||||||| ||||||||||||||||||||||||||  | |||||||| |||   || || || ||||||| |||||||||||    
T  28647240 tgatcatcttccatttgcatcagttcaaatttccttcttagttattgaagcttaatcaatttcactttatcatcaccttcatgatact 28647153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 1287707 - 1287569
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||||| |||||| ||||||||| |||| || || ||||    
T  1287707 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctacatcagctcaaatttctttctcagtgattgaa 1287608  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||   || ||||| ||||||| |||||||||||    
T  1287607 gcttaatcgatttcaccttatcatcaccttcatgatact 1287569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 41946145 - 41946058
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||||||||||||| |||||| ||||||||||| | ||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  41946145 tgatcatcttccatctacatcagctcaaatttcctccgtagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 41946058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 1288479 - 1288364
Alignment:
Q  55 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 154  Q
    ||||| |||||| |||||||| || ||||| |||| |||||| || || || ||||||||    ||||| ||| |||| ||||||||  |||| ||||||    
T  1288479 ttgacatacactcagcaagttgcactgcattccaggaacatagataacttcctcaattattaccattttcccattctttccttcaataacaatatttccc 1288380  T
Q  155 atgccttctgcaacca 170  Q
    || |||||||||||||    
T  1288379 attccttctgcaacca 1288364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 200687 - 200801
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  200687 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 200786  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  200787 ttccttctgcaacca 200801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 315524 - 315638
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  315524 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 315623  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  315624 ttccttctgcaacca 315638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 30408806 - 30408920
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  30408806 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 30408905  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  30408906 ttccttctgcaacca 30408920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 43810486 - 43810600
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  43810486 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 43810585  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  43810586 ttccttctgcaacca 43810600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 264 - 469
Target Start/End: Original strand, 16598070 - 16598275
Alignment:
Q  264 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtgttcatctgattgaaaatat 363  Q
    |||||||||||||| ||| | |||||||||| ||||||||||| |||||| |||  ||||||||| |||| ||| ||||  |||||| ||||   || ||    
T  16598070 actatgaaatcaaaccttagagatagagttctcatgatcttctcaacaatttgtggatctgaaatagtttcactccatgccttcatccgattttcaacat 16598169  T
Q  364 taatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctt 463  Q
    ||||||  || || |||||||||||||| || || ||||||||||| |||| |  |||||||||||||| || ||| |||||||| |||| ||| |||||    
T  16598170 taatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactattcaaatttccttcataaagagtgaagctttatctacttcacctt 16598269  T
Q  464 ttcatc 469  Q
    ||||||    
T  16598270 ttcatc 16598275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 12019669 - 12019531
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  12019669 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 12019570  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  12019569 gcttaatcaacttcactttatcatcaccttcatgatact 12019531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 37659607 - 37659469
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  37659607 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 37659508  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  37659507 gcttaatcaacttcactttatcatcaccttcatgatact 37659469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 10275366 - 10275279
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  10275366 tgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 10275279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 7103151 - 7103289
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7103151 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7103250  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7103251 gcttaatcaacttcactttatcatcaccttcatgatact 7103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 16795049 - 16794911
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  16795049 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 16794950  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  16794949 gcttaatcaacttcactttatcatcaccttcatgatact 16794911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 481
Target Start/End: Complemental strand, 30048276 - 30048062
Alignment:
Q  264 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtgttcatctgattgaaaatat 363  Q
    ||||| |||| ||||||||| ||||| ||||  |||||| ||| || ||| |||||||| || ||||||| ||||||||  ||||| ||    | || ||    
T  30048276 actataaaataaaatcttggagatagtgttcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatttgt---acaacat 30048180  T
Q  364 taatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctt 463  Q
    ||||||  ||  | |||||||||| ||| ||||| || |||||||| |||||||  | |||||||||||||| |||| ||||||| |||| ||| |||||    
T  30048179 taatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagaccgaagctttatctccttcacctt 30048080  T
Q  464 ttcatcacattcatgata 481  Q
     ||||| | |||||||||    
T  30048079 ctcatctccttcatgata 30048062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 40371024 - 40371127
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||||||||||||||||||||| || |||||||    
T  40371024 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcagttcaaatttccttctcagtgactgaa 40371123  T
Q  445 gctt 448  Q
    ||||    
T  40371124 gctt 40371127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 30049018 - 30048864
Alignment:
Q  24 tcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttt 123  Q
    ||||| ||||||| || || |||||||| | |||||||||||| | |||||| |||| ||||||  ||| ||| |||||||||| |||||   ||| |||    
T  30049018 tcattgttactgaatagcccttttgcaccaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattt 30048919  T
Q  124 tccaatcttgccttcaattgcaatttttcccatgccttctgcaaccagggttcta 178  Q
    |||| |||| | ||||||  |||| ||||||||||||| | |||| || ||||||    
T  30048918 tccattctttctttcaataacaatctttcccatgccttttccaactagtgttcta 30048864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 30696176 - 30696038
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| || || ||||    
T  30696176 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaa 30696077  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||| ||||    
T  30696076 gcttaatcaacttcactttatcatcaccttcatggtact 30696038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 40370249 - 40370362
Alignment:
Q  55 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 154  Q
    |||||||||||| |||||||| || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || |||    
T  40370249 ttgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatgttcccc 40370348  T
Q  155 atgccttctgcaac 168  Q
    || |||||||||||    
T  40370349 attccttctgcaac 40370362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 7102377 - 7102491
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  7102377 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 7102476  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  7102477 ttccttctgcaacca 7102491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 16795823 - 16795709
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  16795823 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 16795724  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  16795723 ttccttctgcaacca 16795709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 43548595 - 43548457
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| |||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  43548595 ttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaa 43548496  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||   || || || ||||||| |||||||||||    
T  43548495 gcttaatcaatttcactttatcatcaccttcatgatact 43548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 463
Target Start/End: Original strand, 22931084 - 22931202
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || |||||||||  |||| |||||||||||||| ||||  ||||||||||| |||||||  ||||||||||||||||   ||||||    
T  22931084 ttcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaactcaaatttccttcttaataactgaa 22931183  T
Q  445 gcttgatctgctttacctt 463  Q
    |||| |||||||| |||||    
T  22931184 gctttatctgcttcacctt 22931202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 54171121 - 54171259
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  54171121 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 54171220  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  54171221 gcttaatcaacttcactttatcatcaccttcatgatact 54171259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 21847957 - 21847870
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||  ||| || || ||||||| |||||||||||    
T  21847957 tgatcatcttccatttgcatcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgatact 21847870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 756702 - 756564
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || |||||||| ||||| |||  ||| || |||||| |||||||||||||||| |||||||| || || || || ||||    
T  756702 ttcatctgattcacaagattgatgagtttggagatgtattcagaaatcttgtgatcaacttccatctgcatcagctcaaatttactcctcagtgattgaa 756603  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||   || || || ||||||| |||||||||||    
T  756602 gcttaatcaatttcactttatcatcaccttcatgatact 756564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 9698461 - 9698323
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  9698461 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 9698362  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  9698361 gcttaatcaacttcactttatcaccaccttcatgatact 9698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 54170347 - 54170461
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  54170347 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 54170446  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  54170447 ttccttctgcaacca 54170461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 244 - 477
Target Start/End: Original strand, 54093 - 54325
Alignment:
Q  244 ttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgt 343  Q
    ||||||||| ||| || | ||||||||| | ||||||||| ||||| |||| ||| ||||| | |||||| |||| |||  |||||||   ||| ||||     
T  54093 ttgattcttgaattgctacaactatgaagttaaatcttggtgatagggttctcattatcttttcaacaatttgttgatcataaattgtcccactccatgc 54192  T
Q  344 gttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactga 443  Q
     ||| ||||||| | ||| || |||| |||| | |||||||||||||| || ||||  |||||||| |  ||||||| ||||||||| || | ||| |||    
T  54193 cttcctctgattcacaatgttgatcactttg-agatgtaatcaacaatcttatgatattcttccatttatatcagttgaaatttcctcctcaaagattga 54291  T
Q  444 agcttgatctgctttaccttttcatcacattcat 477  Q
    |||||||||||||| ||||||||||||| |||||    
T  54292 agcttgatctgcttcaccttttcatcaccttcat 54325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 48642 - 48780
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  48642 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 48741  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  48742 gcttaatcaacttcactttatcatcaccttcatgatact 48780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 47868 - 47982
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  47868 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 47967  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  47968 ttccttctgcaacca 47982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 7943860 - 7943998
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7943860 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7943959  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7943960 gcttaatcaacttcactttatcatcaccttcatgatact 7943998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 480
Target Start/End: Complemental strand, 730593 - 730353
Alignment:
Q  240 tcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgc 339  Q
    ||||||||||||| ||| || |  ||||| |||||||||||||  ||||| |||| ||| || |||| |||||| |||| ||| |  |||| ||  |  |    
T  730593 tcctttgattcttgaattgcaaccactataaaatcaaatcttgatgatagtgttctcatcattttctcaacaatttgttgatcagtcattgcttctccac 730494  T
Q  340 atgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagaga 439  Q
    | |  ||||||||||| | |||||| || |||||||| || || ||| |||| ||||| || || ||||||||||||| |||||| |||||||| | |||    
T  730493 aagccttcatctgattcacaatattgatgagtttggagatatattcagcaatattttgctcttcctccatctgcatcaattcaaacttccttctcaaaga 730394  T
Q  440 ctgaagcttgatctgctttaccttttcatcacattcatgat 480  Q
    ||||||||| |||  ||| ||||| ||||| | ||||||||    
T  730393 ctgaagcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 27757777 - 27757639
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  27757777 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 27757678  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    | || |||  ||| || || ||||||| |||||||||||    
T  27757677 gtttaatcaacttcactttatcatcaccttcatgatact 27757639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 8319281 - 8319419
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8319281 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8319380  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8319381 gcttaatcaacttcactttatcatcaccttcatgatact 8319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 17160427 - 17160335
Alignment:
Q  391 ttttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||| ||||||||||||||||||||| ||||||||||| || || || |||||||| |||  ||| || || ||||||| |||||| ||||    
T  17160427 tttttttatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaacttcactttatcatcaccttcatggtact 17160335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 17881256 - 17881394
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||  || |||||||||||||| || || ||||    
T  17881256 ttcatctgattcacaagattgatgagtttagagatgtattcataaatcttatgatcatcttccatttgcaatagctcaaatttccttctcagtgattgaa 17881355  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  17881356 gcttaatcaacttcactttatcatcaccttcatgatact 17881394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 27571563 - 27571647
Alignment:
Q  399 tcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    ||||||||||| |||||||||||||| |||||||| || || |||||||| |||   || || || ||||||| |||||||||||    
T  27571563 tcatcttccatttgcatcagttcaaacttccttctcagtgattgaagcttaatcaatttcactttatcatcaccttcatgatact 27571647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 8318507 - 8318621
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  8318507 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 8318606  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  8318607 ttccttctgcaacca 8318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 17889632 - 17889745
Alignment:
Q  55 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 154  Q
    |||||||||||| |||||||| || ||||| |||| |||||| |  || |||| |||||| |  | ||| ||| |||| |||||||| ||||| || |||    
T  17889632 ttgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttaaattattgccactttcccattctttccttcaatagcaatattcccc 17889731  T
Q  155 atgccttctgcaac 168  Q
    || |||||||||||    
T  17889732 attccttctgcaac 17889745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 27570734 - 27570847
Alignment:
Q  55 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 154  Q
    |||||||||||| |||||||| || ||||| | || |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || |||    
T  27570734 ttgacctacactcagcaagttgcactgcattctaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccc 27570833  T
Q  155 atgccttctgcaac 168  Q
    || |||||||||||    
T  27570834 attccttctgcaac 27570847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 44147938 - 44147800
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  44147938 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 44147839  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  44147838 gcttaatcaacttcactttatcatcaccttcatgatact 44147800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 481
Target Start/End: Complemental strand, 20290509 - 20290246
Alignment:
Q  218 ttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgt 317  Q
    |||||||||||  |||||||  ||||||||||| | ||| || |  ||||| |||||||||||||| ||||| |||| |||||| |||| |||||| |||    
T  20290509 ttcaatcttcaaagttttcacatcctttgattcatgaattgcaaccactataaaatcaaatcttggagatagtgttctcatgattttctcaacaatttgt 20290410  T
Q  318 taatctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatca 417  Q
    | ||||| || |  ||  |   | |  || |||||||| | || ||| || |||||||| ||||||||| |||| || |  ||||| ||||| |||||||    
T  20290409 tgatctgtaactacttctccataagcttttatctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatca 20290310  T
Q  418 gttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgata 481  Q
     || ||| |||||||| |  ||||||||||| |||||||  ||||| ||||||| |||||||||    
T  20290309 atttaaacttccttctcaatgactgaagctttatctgctccaccttatcatcaccttcatgata 20290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 31355506 - 31355421
Alignment:
Q  398 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||| || |||  ||| || || ||||||| |||||||||||    
T  31355506 atcatcttccatctgcatcagctcaaatttccttctcagtgactgaagtttaatcatcttcactttatcatcaccttcatgatact 31355421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 43683007 - 43683094
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||||||||||| || |||||||||||||||||||| || || ||||| || |||  ||| || || ||||||| |||||||||||    
T  43683007 tgatcatcttccatttgtatcagttcaaatttccttctcagtgattgaagtttaatcaacttcactttatcatcaccttcatgatact 43683094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 27187019 - 27186881
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  27187019 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 27186920  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  27186919 gcttaatcaacttcactttatcaccaccttcatgatact 27186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 44148712 - 44148598
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  44148712 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 44148613  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  44148612 ttccttctgcaacca 44148598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 8051772 - 8051634
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8051772 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8051673  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8051672 gcttaatcaacttcactttatcatcaccttcatgatact 8051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 36671431 - 36671293
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  36671431 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 36671332  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  36671331 gcttaatcaacttcactttatcatcaccttcatgatact 36671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 13270358 - 13270443
Alignment:
Q  398 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||||||||||| |||||||| |||||||||||||| || || |||||||| |||  ||| || || ||||||| |||||||||||    
T  13270358 atcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 13270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 35953920 - 35953989
Alignment:
Q  396 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctttt 465  Q
    |||||||||||||| |||||||| |||||||||||||| || || |||||||| |||  |||||| ||||    
T  35953920 tgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaactttacttttt 35953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 8052546 - 8052432
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  8052546 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 8052447  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  8052446 ttccttctgcaacca 8052432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 36672205 - 36672091
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  36672205 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 36672106  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  36672105 ttccttctgcaacca 36672091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 39794775 - 39794637
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  39794775 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 39794676  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  39794675 gcttaatcaacttcactttatcatcaccttcatgatact 39794637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 26312393 - 26312255
Alignment:
Q  345 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 444  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| || |    
T  26312393 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgga 26312294  T
Q  445 gcttgatctgctttaccttttcatcacattcatgatact 483  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  26312293 gcttaatcaacttcactttatcatcaccttcatgatact 26312255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 36617875 - 36617812
Alignment:
Q  218 ttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatctt 281  Q
    |||||||||||| |||||||  ||||||||||||| |||  | | |||||||||||||||||||    
T  36617875 ttcaatcttcatagttttcacatcctttgattcttgaatgacaacaactatgaaatcaaatctt 36617812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 26313167 - 26313053
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  26313167 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 26313068  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  26313067 ttccttctgcaacca 26313053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 39795549 - 39795435
Alignment:
Q  56 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 155  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  39795549 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 39795450  T
Q  156 tgccttctgcaacca 170  Q
    | |||||||||||||    
T  39795449 ttccttctgcaacca 39795435  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 64579 - 64692
Alignment:
Q  370 gtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatc 469  Q
    ||||||| ||||| |||  ||| || ||||||||||||||||||||||| ||||||||||| || || || |||||||| |||   || ||||| |||||    
T  64579 gtttggagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaatttcaccttatcatc 64678  T
Q  470 acattcatgatact 483  Q
    || |||||||||||    
T  64679 accttcatgatact 64692  T

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