View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16577_low_9 (Length: 448)
Name: NF16577_low_9
Description: NF16577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16577_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 13075888 - 13075447
Alignment:
| Q |
1 |
ctgcatgtgcatccacctttgatattgtcaactttacttgtagagtgcaaacttttattgcagctccgaggacatcaatcaattcgaaattcaaattgat |
100 |
Q |
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| T |
13075888 |
ctgcatgtgcagccacctttgatattgtcaattttacttgtagagtacaaacttttattgcagctccgaggacatcaatcaattcgaaattcaaattgat |
13075789 |
T |
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| Q |
101 |
acttataagaggttgaattgttgcgagacaaatgtcggggtaatctgtgtgcatacatatttgatcaattcctagggtgctttgtttaattgattcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075788 |
acttataagaggttgaattgttgcgagacaaatgtcggggtaatctgtgtgcatacatatttgatcaattcctagggtgctttgtttaattgattcaaat |
13075689 |
T |
|
| Q |
201 |
gggtgttgaggcattgtcatggggtctatgcttatttcccctttgagaaggtcggagaatgcatttttgaaggaagctgaatggccaaatgcttgttgtt |
300 |
Q |
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| T |
13075688 |
gggtgttgaggcattgtcatggggtctatgcttatttcccctttgagaaggtcggagaatgcatttttgaaggaagctgaatggccaaatgcttgttgtt |
13075589 |
T |
|
| Q |
301 |
ctggacctggttctggttttgacggtgcttgtgcttgcgcttgtggaattaagagcgagtcgaaggatgcttctgaagaatgggtcggaggatgcgccgt |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075588 |
ctggacctggttctggtttcgacggtgcttgtgcttgcgcttgtggaattaagagcgagtcgaaggatgcttctgaagaatgggtcggaggatgcgccgt |
13075489 |
T |
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| Q |
401 |
gtgatgactagaatgggtcggaggatgttccatgtgatgatg |
442 |
Q |
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| T |
13075488 |
gtgatgactagaatgggtcggaggatgttccatgtgatgatg |
13075447 |
T |
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