View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_high_10 (Length: 410)
Name: NF16578_high_10
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 165 - 391
Target Start/End: Original strand, 4239219 - 4239444
Alignment:
| Q |
165 |
attttagtggatcgtatcaacaaggtcactcagacactttaatatgaaagaatagtgaataagtatgggagaagagtttaacgaattacattaggaccca |
264 |
Q |
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| T |
4239219 |
attttagtgg-tcgtatcaacaaggtcactcacacactttaatatgaaagaatagtgaataagtttgggagaagagtttaataaattacctttggaccca |
4239317 |
T |
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| Q |
265 |
tagggccactcctccaaagtggggtatgggatgtactacaatcagaacaaaccctaacggtgttgttaccgctgttactactagggcttgtttggttgta |
364 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4239318 |
tagggccactcctccaaagtggggtatgagatgtactacaatcagaacaaaccctaacggtgttgttaccgctgttactactagggcttgtttggctgta |
4239417 |
T |
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| Q |
365 |
ccttatattttgatatcttggactagt |
391 |
Q |
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||||| |||||||| |||||||||||| |
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| T |
4239418 |
ccttacattttgatttcttggactagt |
4239444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 19938373 - 19938473
Alignment:
| Q |
292 |
gggatgtactacaatcagaacaaaccctaacggtgttgttaccgctgttactactagggcttgtttggttgtaccttatattttgatatcttggactagt |
391 |
Q |
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| T |
19938373 |
gggatgtactacaatcagaacaaaccctaacggtgttgttaccgctgttacttctagggcttgtttggttgtaccttatattttgatatcttggactagt |
19938472 |
T |
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| Q |
392 |
g |
392 |
Q |
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| T |
19938473 |
g |
19938473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 19914880 - 19915004
Alignment:
| Q |
1 |
ctagttcagtaattcacattcaacttactaaaacatttacttgcgaccatttcagtaggaatcatttctgaacacaaacgatcgtgatatatgagacaat |
100 |
Q |
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| T |
19914880 |
ctagttcaataactcacattcaactcactataacatttagttgcaagcattttagtaggaatcatttctgaacacaaacgattgtgatatatcagacaat |
19914979 |
T |
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| Q |
101 |
tttattatgttcaataaaaggtatt |
125 |
Q |
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| T |
19914980 |
tttattaagttgaataaaaggtatt |
19915004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 19921541 - 19921614
Alignment:
| Q |
319 |
taacggtgttgttaccgctgttactactagggcttgtttggttgtaccttatattttgatatcttggactagtg |
392 |
Q |
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| T |
19921541 |
taacggtgtttttaccactattactactagggtttgtttggttgtaccctgtattttgatatcttggactagtg |
19921614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 19921452 - 19921488
Alignment:
| Q |
202 |
tttaatatgaaagaatagtgaataagtatgggagaag |
238 |
Q |
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| T |
19921452 |
tttaatatgaaagaatagtgaataagtctgggagaag |
19921488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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