View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16578_high_19 (Length: 350)

Name: NF16578_high_19
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16578_high_19
NF16578_high_19
[»] chr1 (6 HSPs)
chr1 (141-299)||(37881940-37882099)
chr1 (1-103)||(37881800-37881902)
chr1 (1-97)||(37855572-37855668)
chr1 (1-97)||(37867760-37867856)
chr1 (1-97)||(37911745-37911841)
chr1 (142-210)||(37911890-37911958)
[»] scaffold0187 (6 HSPs)
scaffold0187 (1-106)||(6571-6676)
scaffold0187 (1-97)||(16908-17004)
scaffold0187 (1-97)||(27236-27332)
scaffold0187 (142-233)||(6441-6533)
scaffold0187 (235-272)||(6387-6424)
scaffold0187 (158-233)||(27093-27170)
[»] chr7 (1 HSPs)
chr7 (1-44)||(45759321-45759364)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 141 - 299
Target Start/End: Original strand, 37881940 - 37882099
Alignment:
Q  141 tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatt 239  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37881940 tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatt 37882039  T
Q  240 taattctaatttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttac 299  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37882040 taattctaatttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttac 37882099  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37881800 - 37881902
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggatacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  37881800 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacga 37881899  T
Q  101 aca 103  Q
    |||    
T  37881900 aca 37881902  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37855572 - 37855668
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  37855572 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata 37855668  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37867760 - 37867856
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  37867760 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata 37867856  T

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Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37911745 - 37911841
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  37911745 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata 37911841  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
Q  142 ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt 210  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  37911890 ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt 37911958  T

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Target: scaffold0187 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 6676 - 6571
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggatacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  6676 gttattgacatgagagctacagcattcattgctcaatacaagaaacgaatttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacga 6577  T
Q  101 acaatc 106  Q
    ||||||    
T  6576 acaatc 6571  T

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Target: scaffold0187; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17004 - 16908
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17004 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata 16908  T

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Target: scaffold0187; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27332 - 27236
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  27332 gttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaaggtcaacctgatcagtaggata 27236  T

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Target: scaffold0187; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 6533 - 6441
Alignment:
Q  142 ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct 233  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||||    
T  6533 ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct 6441  T

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Target: scaffold0187; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
Q  235 taatttaattctaatttagagaacagtgcaaagtattc 272  Q
    ||||||| || |||||||||||||||||||||||||||    
T  6424 taatttagttttaatttagagaacagtgcaaagtattc 6387  T

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Target: scaffold0187; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
Q  158 tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct 233  Q
    ||||||||||||||||| |||||||  |||||||| | |||||||||||| ||| | ||||||||| |||| ||||||    
T  27170 tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct 27093  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45759364 - 45759321
Alignment:
Q  1 gttattgacatgagagctacagcattcattgctcaatacaagaa 44  Q
    ||||||||||||||||||||||| || ||||||| |||||||||    
T  45759364 gttattgacatgagagctacagcttttattgctcgatacaagaa 45759321  T

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