View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16578_high_25 (Length: 312)

Name: NF16578_high_25

Description: NF16578

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16578_high_25

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 124; E-Value: 9e-64

Query Start/End: Original strand, 158 - 309

Target Start/End: Original strand, 36605754 - 36605905

Alignment:

Q	158	catgttaatataggtagttaaaatacatatatattgggaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag	257	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36605754	catgttaatgtaggtagttaaaatacatatatactgtaaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag	36605853	T

Q	258	attgtagaatcaaaatgatgttccactatttgattgagattcatttcagtcg	309	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	36605854	attgtagaatcaaaatgatgttttactatttgattgagattcagttcagtcg	36605905	T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 57; E-Value: 8e-24

Query Start/End: Original strand, 194 - 305

Target Start/End: Complemental strand, 32649746 - 32649635

Alignment:

Q	194	ggaattgaatagagtaaattaatataggcaaatgggggaaaa-tttgaggaatgaaaactaatagattgtagaatcaaaatgatgttccactatttgatt	292	Q
		\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	32649746	ggaatggaagagagttaattaatataggcaaatgtgggaaaaatttgaggaatgaaaactaatagattatagaatgaaaattatgttcc-ctgtttgatt	32649648	T

Q	293	gagattcatttca	305	Q
		\|\| \|\|\|\|\| \|\|\|\|
T	32649647	gacattcagttca	32649635	T

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