View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_high_29 (Length: 288)
Name: NF16578_high_29
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 7001219 - 7000957
Alignment:
| Q |
20 |
acaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacacaactacattacttgctacaatgcacccc |
119 |
Q |
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||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7001219 |
acaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatgacccaactacattacttgctacaatgcacccc |
7001120 |
T |
|
| Q |
120 |
cattgcaggaggtgaaaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||| | |
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| T |
7001119 |
cattgcaggaggtgaaaatgaaacaaaatatggaatgattaggattgctctcaccctgtttcaagttcaaaaggaagtggaccttgaaaaccaggaagct |
7001020 |
T |
|
| Q |
220 |
gttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaaaagtccaagag |
282 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||| |||||||| |||| |||||| |
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| T |
7001019 |
gttcaacctttgagccataagcttcaagaggagttaacatatgcaaactaagaagtacaagag |
7000957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 7044501 - 7044228
Alignment:
| Q |
20 |
acaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatt---tatgac---acaactacattacttgctacaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||||| || |
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| T |
7044501 |
acaaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattacttgctacactg |
7044402 |
T |
|
| Q |
114 |
cacccccattg-caggaggtgaaaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaacca |
212 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||||| |||||||| |||||||||||| |
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| T |
7044401 |
tacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaaaattg--ctgaccctgtttcaagttcaaatggaagaggtccttgaaaacca |
7044304 |
T |
|
| Q |
213 |
ggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaaaagtccaagagctagta |
288 |
Q |
| |
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|||||||||||||||||||||| | ||||||||| | |||||||||| | ||||||||||||||||||||| |||| |
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| T |
7044303 |
ggaagatgttcaacctttgagcgagaagcttcaagaggagttaacatctgcaaactaaaaagtccaagagcaagta |
7044228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 6992295 - 6992160
Alignment:
| Q |
144 |
aaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagctt |
243 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6992295 |
aaaatatggaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagctt |
6992196 |
T |
|
| Q |
244 |
caatatgagttaacatattcaaactaaaaagtccaa |
279 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
6992195 |
caatatgagttaacatattcaaagtaaaaagtccaa |
6992160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 7025373 - 7025236
Alignment:
| Q |
151 |
ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatg |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| | | |
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| T |
7025373 |
ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagtggcccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagagg |
7025274 |
T |
|
| Q |
251 |
agttaacatattcaaactaaaaagtccaagagctagta |
288 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||| |||| |
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|
| T |
7025273 |
agttaacatatgcaaactaaaaagtgcaaaagcaagta |
7025236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 7010089 - 7009944
Alignment:
| Q |
135 |
aaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagc |
234 |
Q |
| |
|
|||||||| |||| |||||||||||| |||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7010089 |
aaatgaaataaaaaatggaatgattaagatta--ctgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagc |
7009992 |
T |
|
| Q |
235 |
cataagcttcaatatgagttaacatattcaaactaaaaagtccaagag |
282 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||| |||| |||||| |
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|
| T |
7009991 |
cataagcttcaagaggagttaacatatgcaaactaagaagtacaagag |
7009944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 7051357 - 7051233
Alignment:
| Q |
151 |
ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatg |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||| | | |
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|
| T |
7051357 |
ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccagaagcttcaagagg |
7051258 |
T |
|
| Q |
251 |
agttaacatattcaaactaaaaagt |
275 |
Q |
| |
|
||||||||||| ||||||||||||| |
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|
| T |
7051257 |
agttaacatatgcaaactaaaaagt |
7051233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 7018113 - 7018011
Alignment:
| Q |
151 |
ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttg-aaaaccaggaagatgttcaacctttgagccataagcttcaatat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
7018113 |
ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttcaacctttgagccataagcttcaatgt |
7018014 |
T |
|
| Q |
250 |
gag |
252 |
Q |
| |
|
||| |
|
|
| T |
7018013 |
gag |
7018011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 7036681 - 7036568
Alignment:
| Q |
169 |
ctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaact |
268 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||| |
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|
| T |
7036681 |
ctcaccctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaacatatgcaaact |
7036582 |
T |
|
| Q |
269 |
aaaaagtccaagag |
282 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
7036581 |
aagaagtacaagag |
7036568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 7011312 - 7011207
Alignment:
| Q |
20 |
acaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacac--aactacattacttgctacaatgcacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||| |
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|
| T |
7011312 |
acaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatgacacataattacattacttgctacactgcacc |
7011213 |
T |
|
| Q |
118 |
cccatt |
123 |
Q |
| |
|
|||||| |
|
|
| T |
7011212 |
cccatt |
7011207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 7018956 - 7018884
Alignment:
| Q |
20 |
acaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacaca |
92 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7018956 |
acaaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatcaaatttatgacaca |
7018884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 6992601 - 6992541
Alignment:
| Q |
22 |
aaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaat |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6992601 |
aaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaat |
6992541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 7037743 - 7037658
Alignment:
| Q |
22 |
aaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatga--cacaactacattacttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| || |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7037743 |
aaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaactacattacttg |
7037658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 7051586 - 7051525
Alignment:
| Q |
17 |
ttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc |
78 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
7051586 |
ttaacaaaataatagaacacttgcatgtcgtcatctgtttcccctaaccccaagtacctatc |
7051525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 7025924 - 7025837
Alignment:
| Q |
20 |
acaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatg--acacaactacattacttg |
105 |
Q |
| |
|
|||||||| || ||||||||||||||||||| || || |||||||||||||||||||||||| |||| ||||| |||||||||||| |
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|
| T |
7025924 |
acaaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatcaaatatatgatacacagctacattacttg |
7025837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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