View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_high_3 (Length: 478)
Name: NF16578_high_3
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 38 - 459
Target Start/End: Complemental strand, 46981453 - 46981032
Alignment:
| Q |
38 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
137 |
Q |
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| T |
46981453 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
46981354 |
T |
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| Q |
138 |
actccctggttggagacaagatgagtgcagtgggaaaagcaacatcggaatcaccaccacctccacgtggcaacaaaccagaagctaaacgttctttcat |
237 |
Q |
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| T |
46981353 |
actccctagttggagacaagatgagtgcagtgggaaaagcaacatcggaatcaacaccacctccacgtggcaacaaaccagaagctaaacgttctttcat |
46981254 |
T |
|
| Q |
238 |
gatcccagatatgatcggaaaacaaaacgccgccgttttacccgagccagtttgagcacaagccataaggtctctaccagcaacagcaatggggatcgcg |
337 |
Q |
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| T |
46981253 |
gatcccagatatgatcggaaaacaaaacgccgcagttttacccgagccagtttgagcacaagccataaggtctctaccagcaacagcaatggggatcgcg |
46981154 |
T |
|
| Q |
338 |
taacgctgaaccggagtaggtttcacatacttacatctctcaatattattcttcaaatcttcatgaagctccgtttcggaaaatagattcaccggcggtg |
437 |
Q |
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| T |
46981153 |
taacgctgaaccggagtaggtttcacatacttacatctctcaatattattcttcaaatcttcatgaagctccgtttcggcaaatagattcaccggcggtg |
46981054 |
T |
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| Q |
438 |
gaacattctctcccgtcgcttc |
459 |
Q |
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| T |
46981053 |
gaacattctctcccgtcgcttc |
46981032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46981527 - 46981488
Alignment:
| Q |
1 |
aacaccaacactggtagtaatataagaaaatgacataata |
40 |
Q |
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| T |
46981527 |
aacaccaacactggtagtaatataagaaaatgacataata |
46981488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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