View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_high_30 (Length: 287)
Name: NF16578_high_30
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_30 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 17833754 - 17834013
Alignment:
| Q |
19 |
gcttcttcatttttgagtgtgggatttacattgtagtttggattgatatagttttttgctctgatatatattcctttaatgttgctactacttcatgcag |
118 |
Q |
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| T |
17833754 |
gcttcttcattcttgagtgtgggatttacattgtagtttggattgatatagttttttgctctaatatatattcctttaatgttgctactacttcatgcag |
17833853 |
T |
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| Q |
119 |
atttctattgaggcatttcctcaaaattgttgcaaatttatcttggtggatgaggttggagaatgtgttccttacatgtgcaatgctgcttaacatttga |
218 |
Q |
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| T |
17833854 |
atttctattgaggcatttcctcaaaattgttgcaaatttatcttggtggatgagggtggagaatgtgttccttacatgtgcagtgctgcttaacatgtga |
17833953 |
T |
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| Q |
219 |
tgatttagttttaccaagcctttgagattaacattggaatatgtggtcatctgtgctgct |
278 |
Q |
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| T |
17833954 |
tggtttagttttagcaagcctctgagattaacattggaatatgtggtcatttgtgttgct |
17834013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 635 - 838
Alignment:
| Q |
19 |
gcttcttcatttttgagtgtgggatttacattgtagtttggattgatatagttttttgctct--gatatatattcctttaatgttgctactacttcatgc |
116 |
Q |
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| T |
635 |
gcttcttcattcttgagtgtgggattcacattgttatttggattgatatagttttttgctctttgatatatattcctttaatgttgcagctacttcatgc |
734 |
T |
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| Q |
117 |
agatttctattgaggcatttcctcaaaattgttgcaaatttatcttggtggatgaggttggagaatgtgttccttacatgtgcaatgctgcttaacattt |
216 |
Q |
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| T |
735 |
agatttctattgaggcatttcctcaaaattgttgcaaatttatcttggtggatgagggtggagaacgggatccttacacgtgcagtgttgcttaacattt |
834 |
T |
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| Q |
217 |
gatg |
220 |
Q |
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|||| |
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| T |
835 |
gatg |
838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 50231597 - 50231394
Alignment:
| Q |
19 |
gcttcttcatttttgagtgtgggatttacattgtagtttggattgatatagttttttgctct--gatatatattcctttaatgttgctactacttcatgc |
116 |
Q |
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| T |
50231597 |
gcttcttcattcttgagtgtgggattcacattgttatttggattgatatagttttttgctctttgatatgtattcttttaatgttgcagctacttcatgc |
50231498 |
T |
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| Q |
117 |
agatttctattgaggcatttcctcaaaattgttgcaaatttatcttggtggatgaggttggagaatgtgttccttacatgtgcaatgctgcttaacattt |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||| | ||||||||||||| |
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| T |
50231497 |
agatttctatcgaggcatttcctcaaaattgttgcaaatttatcttggtggatgagggtggagaacgggttccttacacgtgcagttctgcttaacattt |
50231398 |
T |
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| Q |
217 |
gatg |
220 |
Q |
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|||| |
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| T |
50231397 |
gatg |
50231394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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