View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16578_high_31 (Length: 286)
Name: NF16578_high_31
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_31 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 45106583 - 45106862
Alignment:
| Q |
7 |
gagagatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacggtgacaggatattctactatagggtcacatagatcaattac |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106583 |
gagaaatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacggtgacaggatattctactatagggtcacatagatcaattac |
45106682 |
T |
|
| Q |
107 |
ttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106683 |
ttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagcca |
45106782 |
T |
|
| Q |
207 |
gcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaattgaaaccatgattatgaatataac |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106783 |
gcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaattgaaaccatgattatgaatataac |
45106862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 5623559 - 5623484
Alignment:
| Q |
157 |
tcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
||||||||| ||||||||| ||||| | |||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
5623559 |
tcagttctgcgtcgggttttaaactcatgatgttccttttttggtagccggcatattttcttgatggatcatacaa |
5623484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 18602485 - 18602405
Alignment:
| Q |
152 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
|||||| |||||||||| |||||||| || || ||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
18602485 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18602405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 18630141 - 18630221
Alignment:
| Q |
152 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
|||||| |||||||||| |||||||| || || ||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
18630141 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18630221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 18642849 - 18642929
Alignment:
| Q |
152 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
|||||| |||||||||| |||||||| || || ||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
18642849 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18642929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 18525066 - 18524986
Alignment:
| Q |
152 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
|||||| ||||||||| |||||||| || || ||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
18525066 |
tatcttaagttctgagcttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18524986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 35298141 - 35298214
Alignment:
| Q |
159 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
||||||| ||||||||| ||||| | ||||||| || |||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
35298141 |
agttctgcgtcgggttttaaactcacgatgttccgtttctggtagccggcatattttcttgatggatcatacaa |
35298214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 38575669 - 38575596
Alignment:
| Q |
159 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
232 |
Q |
| |
|
|||||||||| |||||||| || || ||||| | |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
38575669 |
agttctgagtttggtttcaagctcaagatgtttcgcttttgataacctgcatatttccttgaagggtcatacaa |
38575596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University