View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_high_4 (Length: 468)
Name: NF16578_high_4
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 154 - 449
Target Start/End: Original strand, 7141214 - 7141509
Alignment:
| Q |
154 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
253 |
Q |
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| T |
7141214 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
7141313 |
T |
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| Q |
254 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
353 |
Q |
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| T |
7141314 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
7141413 |
T |
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| Q |
354 |
ccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttactta |
449 |
Q |
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| T |
7141414 |
ccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttactta |
7141509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7141089 - 7141216
Alignment:
| Q |
1 |
agagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgt |
100 |
Q |
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| T |
7141089 |
agagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagctgt |
7141188 |
T |
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| Q |
101 |
gatttgggttagtaacacttaacttata |
128 |
Q |
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| T |
7141189 |
gatttgggttagtaacacttaacttata |
7141216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 275 - 428
Target Start/End: Original strand, 7154105 - 7154258
Alignment:
| Q |
275 |
atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggca |
374 |
Q |
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||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | || ||| |
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| T |
7154105 |
atttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca |
7154204 |
T |
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| Q |
375 |
caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgat |
428 |
Q |
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| T |
7154205 |
caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgat |
7154258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 7152924 - 7153046
Alignment:
| Q |
5 |
tgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatt |
104 |
Q |
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|||| |||| || ||||||||| | |||||||||||| ||||||||||||||| | ||||||| || || | |||| |||||||||||||||||||||| |
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| T |
7152924 |
tgaagttgataacgaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgatt |
7153023 |
T |
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| Q |
105 |
tgggttagtaacacttaacttat |
127 |
Q |
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| T |
7153024 |
tgggttagttacaatgaacttat |
7153046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 7131652 - 7131732
Alignment:
| Q |
316 |
caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcat |
396 |
Q |
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| T |
7131652 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcat |
7131732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 7130752 - 7130839
Alignment:
| Q |
18 |
gaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt |
105 |
Q |
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| T |
7130752 |
gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt |
7130839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 12425604 - 12425527
Alignment:
| Q |
317 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagc |
394 |
Q |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagc |
12425527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 12268081 - 12268153
Alignment:
| Q |
317 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaaga |
389 |
Q |
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| T |
12268081 |
aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataaga |
12268153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 12438728 - 12438646
Alignment:
| Q |
279 |
caggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagt |
361 |
Q |
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| T |
12438728 |
caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagt |
12438646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 55958833 - 55958761
Alignment:
| Q |
317 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaaga |
389 |
Q |
| |
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| T |
55958833 |
aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataaga |
55958761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 55955274 - 55955200
Alignment:
| Q |
320 |
aatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagc |
394 |
Q |
| |
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| T |
55955274 |
aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagc |
55955200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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