View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16578_high_6 (Length: 450)

Name: NF16578_high_6
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16578_high_6
NF16578_high_6
[»] chr2 (6 HSPs)
chr2 (200-439)||(17833215-17833454)
chr2 (11-134)||(17833520-17833643)
chr2 (200-278)||(7391211-7391285)
chr2 (200-278)||(19585827-19585901)
chr2 (80-134)||(7391336-7391390)
chr2 (80-134)||(19585722-19585776)
[»] chr4 (4 HSPs)
chr4 (200-278)||(11657560-11657634)
chr4 (200-280)||(50233626-50233702)
chr4 (80-134)||(11657455-11657509)
chr4 (80-133)||(50233521-50233574)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 200 - 439
Target Start/End: Complemental strand, 17833454 - 17833215
Alignment:
Q  200 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaattttaataatatacggtgtccttg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17833454 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaattttaataatatacggtgtccttg 17833355  T
Q  300 taattaaacctatttgcaacagaaaattcaatgtctcgaaggaaatgtatcgcatatatagcacgtgaagaaaaacatgtgtaaatagaacattgacaac 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17833354 taattaaacctatttgcaacagaaaattcaatgtctcgaaggaaatgcatcgcatatatagcacgtgaagaaaaacatgtgtaaatagaacattgacaat 17833255  T
Q  400 caactcagataaggaaaaacattgaaacaaaggcaacata 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17833254 caactcagataaggaaaaacattgaaacaaaggcaacata 17833215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 17833643 - 17833520
Alignment:
Q  11 cataggttcagggacatgatatctaagaaatgacacatactactacttatgattgtgtaattttcaatcaaagaactcatccataattcaacttaataca 110  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17833643 cataggttcagggtaatgatatctaagaaatgacacatactactacttatgattgtgtaattttcaatcaaagaactcattcataattcaacttaataca 17833544  T
Q  111 tctgaaacaaagctgttaacatgc 134  Q
    ||||||||||||||||||||||||    
T  17833543 tctgaaacaaagctgttaacatgc 17833520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 7391285 - 7391211
Alignment:
Q  200 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaattt 278  Q
    ||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||||| ||||||| |||||||    
T  7391285 gatgttcagaaccaaatgcaaattacatttca----gatttctcgtcaatttaggaaagaatacgtcttgataaaattt 7391211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 19585827 - 19585901
Alignment:
Q  200 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaattt 278  Q
    ||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||||| ||||||| |||||||    
T  19585827 gatgttcagaaccaaatgcaaattacatttca----gatttctcgtcaatttaggaaagaatacgtcttgataaaattt 19585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 7391390 - 7391336
Alignment:
Q  80 aaagaactcatccataattcaacttaatacatctgaaacaaagctgttaacatgc 134  Q
    |||||||||||||||||||||||| ||||||| |||| |||||| ||| ||||||    
T  7391390 aaagaactcatccataattcaactcaatacatatgaagcaaagcagttgacatgc 7391336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 19585722 - 19585776
Alignment:
Q  80 aaagaactcatccataattcaacttaatacatctgaaacaaagctgttaacatgc 134  Q
    |||||||||||||||||||||||| ||||||| |||| |||||| ||| ||||||    
T  19585722 aaagaactcatccataattcaactcaatacatatgaagcaaagcagtttacatgc 19585776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 11657560 - 11657634
Alignment:
Q  200 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaattt 278  Q
    ||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||||| ||||||| |||||||    
T  11657560 gatgttcagaaccaaatgcaaattacatttca----gatttctcgtcaatttaggaaagaatacgtcttgataaaattt 11657634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 50233626 - 50233702
Alignment:
Q  200 gatgttcagaaccaaatgcaaattacatttcaagattatttctcgtcaatttagcaaagaatatgtcttgagaaaatttta 280  Q
    |||||||||||||||||| ||||||||||| |     ||||||||||||||||| |||||||||||||||| |||| ||||    
T  50233626 gatgttcagaaccaaatgaaaattacattttag----atttctcgtcaatttaggaaagaatatgtcttgataaaaattta 50233702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 11657455 - 11657509
Alignment:
Q  80 aaagaactcatccataattcaacttaatacatctgaaacaaagctgttaacatgc 134  Q
    |||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||    
T  11657455 aaagaactcatccataattcaactcaatacatatgaagcaaagcagttaacatgc 11657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 50233521 - 50233574
Alignment:
Q  80 aaagaactcatccataattcaacttaatacatctgaaacaaagctgttaacatg 133  Q
    |||||||||||||||| |||||| |||||||| |||| |||||| |||||||||    
T  50233521 aaagaactcatccatatttcaacctaatacatatgaagcaaagcagttaacatg 50233574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University