View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_1 (Length: 589)
Name: NF16578_low_1
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 21004741 - 21004180
Alignment:
| Q |
18 |
caactacaccccctaattattctctcacaccccaccttctacaactttccacagtcatccctcaaatcacccgccaattttggagaatcccagttttaaa |
117 |
Q |
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| T |
21004741 |
caactacaccccctaattcttctctcacaccccaccttctacaactttccacagtcatccctcaaatcacccgccaattttggagaatcccagttttaaa |
21004642 |
T |
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| Q |
118 |
accccaacaagtcctccaaattttgcttggttttcaatctgagtgtgcaaaagttgttgctcctgttgaaaaggtgaaatctttgtatgaaattttcaaa |
217 |
Q |
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| T |
21004641 |
accccaacaagtcctccaaattttgcttggttttcaatctgagtgtgcaaaagttgttgcccctgttgaaaaggtgaaatctttgtatgaaattttcaaa |
21004542 |
T |
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| Q |
218 |
tggggtgttgagaaaaatgaaacccattttttgaaatcttatgaggttatgatatcgcttcttgttcgtgttgggttgtttagggaagctgagaatttga |
317 |
Q |
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| T |
21004541 |
tggggtgttgagaaaaatgaaacccattttttgaaatcttatgaggttatgatattgcttcttgttcgtgttgggttgtttagggaagctgagaatttga |
21004442 |
T |
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| Q |
318 |
ttagttcgttagagggtcaaggagtttcgtctaatgcaattggtggcgatgtttttgagaaactaattgaagggtatgttggtgtgaaggaattggaaaa |
417 |
Q |
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| T |
21004441 |
ttagttcgttagagggtcaaggagtttcgtttaatgcaattggtggcgatatttttgagaaactaattgaagggtatgttggtgtgaaggaattggaaaa |
21004342 |
T |
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| Q |
418 |
agctgtttttgtgtatgagggtatgaaggaaagaggaatggttccttcgaggttgtgtcagcgagttttacttgattacttggtgaagatgaagagaaca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21004341 |
agctgtttttgtgtatgagggtatgaaggaaagaggaatggttccttcgaggttgtgtcagcgagttttacttgattacttggtgaagatgaagagaaca |
21004242 |
T |
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| Q |
518 |
aagattgtgttccgcgtggcgtttgatttggtggaattgggggaaccattgagttgtgatga |
579 |
Q |
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| T |
21004241 |
aagattgcgtttcgcgtggcgtttgatttggtggaattgggggaaccattgagttgtgatga |
21004180 |
T |
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