View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_10 (Length: 430)
Name: NF16578_low_10
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 92 - 415
Target Start/End: Complemental strand, 27130047 - 27129722
Alignment:
| Q |
92 |
tatgagaattaatggaggaaagaaactttctatagtaaggaatgaagacggttgatgtgaaagtagacgttgcgccattacaaggatgctatagaattct |
191 |
Q |
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| T |
27130047 |
tatgagaattaatggtggaaagaaactttctatagtaaggaatgaagacggttgatgtgaaagtagacgttgcgccattacaaggatgctatagaattct |
27129948 |
T |
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| Q |
192 |
aaattgaatattgcacggtttcggttttgcta----tttacaattaaagtttcaagtactactagtgaatnnnnnnnntctccataaatgtaaagaggca |
287 |
Q |
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| T |
27129947 |
aaattgaatattgcacggtttctgttttgctatttatttacaattaaagtttcaagtactactggtgaat--aaaaaatctccataaatgtaaagaggca |
27129850 |
T |
|
| Q |
288 |
gtggatcacgttagtttttatctcgttattatatacctcaccaaaaacaaacaattgatcacgttaaatactcaaatacacacacaattgagtcaattcc |
387 |
Q |
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| T |
27129849 |
gtggatcacgttaatttttatctcgttattatatacctcaccaaaaacaaacaatttatcacgttaaatactcaaatacacacacaatcgagtcaattcc |
27129750 |
T |
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| Q |
388 |
ttttctcttaatatggttgcaagttgat |
415 |
Q |
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| T |
27129749 |
ttttctcttaatatggttgcaagttgat |
27129722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 27144972 - 27145022
Alignment:
| Q |
92 |
tatgagaattaatggaggaaagaaactttctatagtaaggaatgaagacgg |
142 |
Q |
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| T |
27144972 |
tatgggaattaatggtggaaagaaactttctatagaaaggaatgaagacgg |
27145022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 27263102 - 27263146
Alignment:
| Q |
266 |
tctccataaatgtaaagaggcagtggatcacgttagtttttatct |
310 |
Q |
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| T |
27263102 |
tctccataaatgtaaagaggcaattgatcacgttaatttttatct |
27263146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 27269996 - 27270040
Alignment:
| Q |
266 |
tctccataaatgtaaagaggcagtggatcacgttagtttttatct |
310 |
Q |
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| T |
27269996 |
tctccataaatgtaaagaggcaattgatcacgttaatttttatct |
27270040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 27130131 - 27130098
Alignment:
| Q |
8 |
acatcatcacaactctatatatatgatttgtaag |
41 |
Q |
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| T |
27130131 |
acatcaacacaactctatatatatgatttgtaag |
27130098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 27247656 - 27247700
Alignment:
| Q |
266 |
tctccataaatgtaaagaggcagtggatcacgttagtttttatct |
310 |
Q |
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| T |
27247656 |
tctccataaacgtaaagaggcaattgatcacgttaatttttatct |
27247700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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