View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_13 (Length: 371)
Name: NF16578_low_13
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 30742804 - 30742448
Alignment:
| Q |
1 |
gtggtgcatctatataacattatatatcctataaataaagtagcaagcaacacctttgttt-ggtattttcaattatctctctcactccttcaccacgca |
99 |
Q |
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| T |
30742804 |
gtggtgcatctatataacattatatatcctataaataaagtagctagcaacacctttgttttggtattttcaattatctctctcactccttcaccacgca |
30742705 |
T |
|
| Q |
100 |
aaatggagatggttgagttcattcccatgtgtggaagcataaggtacacaaagagaaaaatataccataagctcaagagcaacaaagaggtgagtgattg |
199 |
Q |
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| T |
30742704 |
aaatggagatggttgagttcattcccatgtgtggaagcataaggtacacaaagagaaaaatataccataagctcaagagcaacaaagaggtgagtgattg |
30742605 |
T |
|
| Q |
200 |
caatattaatgaaaatgttgctatgttaggttcaaagaatttgaacttttttgaaatgatggaaaaagttcaaccaaagatcttaaggttatcaacaaat |
299 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742604 |
cactattaatgaaaatgttgctatgttaggttcaaagaatttgaacttttttgaaatgatggaaaaagttcaaccaaagatcttaaggttatcaacaaat |
30742505 |
T |
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| Q |
300 |
ctatggaaaaggttaagagatggttatatacatggtatgcaatgtatggctgttcat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742504 |
ctatggaaaaggttaagagatggttatatacatggtatgcaatgtatggctgttcat |
30742448 |
T |
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